Hb_002027_060

Information

Type -
Description -
Location Contig2027: 29760-32949
Sequence    

Annotation

kegg
ID rcu:RCOM_0647870
description rrp4, putative
nr
ID XP_012092306.1
description PREDICTED: exosome complex component RRP4 [Jatropha curcas]
swissprot
ID Q09704
description Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=3 SV=1
trembl
ID A0A067JNC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21986 PE=4 SV=1
Gene Ontology
ID GO:0000178
description exosome complex component rrp4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20669: 29771-32892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_060 0.0 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
2 Hb_132840_010 0.0732291413 - - serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_002701_150 0.0746384559 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
4 Hb_001821_160 0.0829190536 - - serine/arginine rich splicing factor, putative [Ricinus communis]
5 Hb_001636_050 0.0837582353 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
6 Hb_013394_030 0.0852569591 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
7 Hb_000402_120 0.0871044204 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
8 Hb_000236_470 0.0871504136 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
9 Hb_000390_230 0.0878793916 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
10 Hb_001952_120 0.0884992673 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
11 Hb_000115_280 0.0888651289 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
12 Hb_002067_030 0.0889257139 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
13 Hb_008887_020 0.0941017277 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
14 Hb_000523_080 0.0954825766 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
15 Hb_000836_410 0.0961733489 - - sec10, putative [Ricinus communis]
16 Hb_001140_030 0.0963705509 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
17 Hb_139002_010 0.0965498981 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
18 Hb_000563_130 0.0982093613 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
19 Hb_007929_080 0.0985567779 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
20 Hb_006688_050 0.0988894434 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_060 Hb_002027_060 Hb_132840_010 Hb_132840_010 Hb_002027_060--Hb_132840_010 Hb_002701_150 Hb_002701_150 Hb_002027_060--Hb_002701_150 Hb_001821_160 Hb_001821_160 Hb_002027_060--Hb_001821_160 Hb_001636_050 Hb_001636_050 Hb_002027_060--Hb_001636_050 Hb_013394_030 Hb_013394_030 Hb_002027_060--Hb_013394_030 Hb_000402_120 Hb_000402_120 Hb_002027_060--Hb_000402_120 Hb_132840_010--Hb_001821_160 Hb_001089_070 Hb_001089_070 Hb_132840_010--Hb_001089_070 Hb_000935_010 Hb_000935_010 Hb_132840_010--Hb_000935_010 Hb_001006_330 Hb_001006_330 Hb_132840_010--Hb_001006_330 Hb_000390_230 Hb_000390_230 Hb_132840_010--Hb_000390_230 Hb_000236_470 Hb_000236_470 Hb_002701_150--Hb_000236_470 Hb_000836_410 Hb_000836_410 Hb_002701_150--Hb_000836_410 Hb_002701_150--Hb_001636_050 Hb_000679_340 Hb_000679_340 Hb_002701_150--Hb_000679_340 Hb_000230_090 Hb_000230_090 Hb_002701_150--Hb_000230_090 Hb_012565_050 Hb_012565_050 Hb_002701_150--Hb_012565_050 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_004976_010 Hb_004976_010 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_013394_030--Hb_002067_030 Hb_128548_010 Hb_128548_010 Hb_013394_030--Hb_128548_010 Hb_000144_070 Hb_000144_070 Hb_013394_030--Hb_000144_070 Hb_004994_010 Hb_004994_010 Hb_013394_030--Hb_004994_010 Hb_010407_050 Hb_010407_050 Hb_013394_030--Hb_010407_050 Hb_008568_020 Hb_008568_020 Hb_013394_030--Hb_008568_020 Hb_012384_030 Hb_012384_030 Hb_000402_120--Hb_012384_030 Hb_032264_060 Hb_032264_060 Hb_000402_120--Hb_032264_060 Hb_001776_060 Hb_001776_060 Hb_000402_120--Hb_001776_060 Hb_000402_120--Hb_001636_050 Hb_000402_120--Hb_013394_030 Hb_032202_080 Hb_032202_080 Hb_000402_120--Hb_032202_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3793 12.3855 16.6483 6.42089 18.6957 9.08564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91042 10.2265 5.89179 11.4767 11.4054

CAGE analysis