Hb_000935_010

Information

Type -
Description -
Location Contig935: 14717-24576
Sequence    

Annotation

kegg
ID rcu:RCOM_0859910
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012079452.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
swissprot
ID Q9SW44
description DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1
trembl
ID A0A067KIM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12576 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62970: 14937-22747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_010 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
2 Hb_004994_010 0.0625105995 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
3 Hb_000165_040 0.0630556481 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
4 Hb_001089_110 0.0637377146 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000617_180 0.0652053781 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
6 Hb_002784_020 0.0656988422 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
7 Hb_002375_010 0.0671803905 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
8 Hb_003861_050 0.0676938753 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
9 Hb_109980_010 0.0680882243 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
10 Hb_000696_230 0.0706226004 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
11 Hb_005867_070 0.0707253342 - - DNA binding protein, putative [Ricinus communis]
12 Hb_000575_040 0.0727098784 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
13 Hb_006483_110 0.0729760063 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
14 Hb_000390_230 0.073249633 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
15 Hb_004267_040 0.0732733148 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
16 Hb_001456_060 0.073983771 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
17 Hb_000441_120 0.0741400384 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000563_130 0.0744684038 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
19 Hb_000417_130 0.0750773971 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
20 Hb_000331_110 0.0759210572 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000935_010 Hb_000935_010 Hb_004994_010 Hb_004994_010 Hb_000935_010--Hb_004994_010 Hb_000165_040 Hb_000165_040 Hb_000935_010--Hb_000165_040 Hb_001089_110 Hb_001089_110 Hb_000935_010--Hb_001089_110 Hb_000617_180 Hb_000617_180 Hb_000935_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_000935_010--Hb_002784_020 Hb_002375_010 Hb_002375_010 Hb_000935_010--Hb_002375_010 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_000339_040 Hb_000339_040 Hb_004994_010--Hb_000339_040 Hb_005867_070 Hb_005867_070 Hb_000165_040--Hb_005867_070 Hb_000441_120 Hb_000441_120 Hb_000165_040--Hb_000441_120 Hb_000006_040 Hb_000006_040 Hb_000165_040--Hb_000006_040 Hb_000174_170 Hb_000174_170 Hb_000165_040--Hb_000174_170 Hb_001021_150 Hb_001021_150 Hb_000165_040--Hb_001021_150 Hb_079526_030 Hb_079526_030 Hb_001089_110--Hb_079526_030 Hb_001433_070 Hb_001433_070 Hb_001089_110--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_000617_180--Hb_002375_010 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_002375_010--Hb_000347_070 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8075 9.55203 12.6205 8.06046 12.668 13.1993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.73906 10.7915 9.02496 13.5191 9.69915

CAGE analysis