Hb_132840_010

Information

Type -
Description -
Location Contig132840: 7507-13443
Sequence    

Annotation

kegg
ID rcu:RCOM_1340560
description serine/threonine-protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002515094.1
description serine/threonine-protein kinase, putative [Ricinus communis]
swissprot
ID P87248
description Serine/threonine-protein kinase ATG1 OS=Colletotrichum lindemuthianum GN=ATG1 PE=3 SV=1
trembl
ID B9RMV5
description Serine/threonine-protein kinase, putative OS=Ricinus communis GN=RCOM_1340560 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase atg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09332: 7553-13423 , PASA_asmbl_09349: 12209-12361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_010 0.0 - - serine/threonine-protein kinase, putative [Ricinus communis]
2 Hb_002027_060 0.0732291413 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
3 Hb_001821_160 0.0737765519 - - serine/arginine rich splicing factor, putative [Ricinus communis]
4 Hb_001089_070 0.0767859308 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
5 Hb_000935_010 0.0780779001 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
6 Hb_001006_330 0.0812054749 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
7 Hb_000390_230 0.0822459462 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
8 Hb_002311_310 0.0824931289 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
9 Hb_079526_030 0.0837123355 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
10 Hb_000864_030 0.0843698011 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
11 Hb_027472_120 0.0856830413 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000331_110 0.0856836286 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
13 Hb_000563_130 0.0861289473 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
14 Hb_005289_040 0.0871007123 - - poly(A) polymerase, putative [Ricinus communis]
15 Hb_000174_170 0.0876175529 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
16 Hb_013394_030 0.0892816071 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
17 Hb_004267_040 0.0892890659 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
18 Hb_000115_280 0.0897581238 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
19 Hb_004994_010 0.0909228257 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
20 Hb_001089_110 0.0912987957 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_132840_010 Hb_132840_010 Hb_002027_060 Hb_002027_060 Hb_132840_010--Hb_002027_060 Hb_001821_160 Hb_001821_160 Hb_132840_010--Hb_001821_160 Hb_001089_070 Hb_001089_070 Hb_132840_010--Hb_001089_070 Hb_000935_010 Hb_000935_010 Hb_132840_010--Hb_000935_010 Hb_001006_330 Hb_001006_330 Hb_132840_010--Hb_001006_330 Hb_000390_230 Hb_000390_230 Hb_132840_010--Hb_000390_230 Hb_002701_150 Hb_002701_150 Hb_002027_060--Hb_002701_150 Hb_002027_060--Hb_001821_160 Hb_001636_050 Hb_001636_050 Hb_002027_060--Hb_001636_050 Hb_013394_030 Hb_013394_030 Hb_002027_060--Hb_013394_030 Hb_000402_120 Hb_000402_120 Hb_002027_060--Hb_000402_120 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_016777_040 Hb_016777_040 Hb_001089_070--Hb_016777_040 Hb_005289_040 Hb_005289_040 Hb_001089_070--Hb_005289_040 Hb_000603_030 Hb_000603_030 Hb_001089_070--Hb_000603_030 Hb_001005_030 Hb_001005_030 Hb_001089_070--Hb_001005_030 Hb_021943_080 Hb_021943_080 Hb_001089_070--Hb_021943_080 Hb_001089_070--Hb_005588_090 Hb_004994_010 Hb_004994_010 Hb_000935_010--Hb_004994_010 Hb_000165_040 Hb_000165_040 Hb_000935_010--Hb_000165_040 Hb_001089_110 Hb_001089_110 Hb_000935_010--Hb_001089_110 Hb_000617_180 Hb_000617_180 Hb_000935_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_000935_010--Hb_002784_020 Hb_002375_010 Hb_002375_010 Hb_000935_010--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_001006_330--Hb_000696_230 Hb_000011_100 Hb_000011_100 Hb_001006_330--Hb_000011_100 Hb_001006_330--Hb_001821_160 Hb_000441_120 Hb_000441_120 Hb_001006_330--Hb_000441_120 Hb_000816_250 Hb_000816_250 Hb_001006_330--Hb_000816_250 Hb_000922_360 Hb_000922_360 Hb_001006_330--Hb_000922_360 Hb_000836_410 Hb_000836_410 Hb_000390_230--Hb_000836_410 Hb_000390_230--Hb_004994_010 Hb_000115_280 Hb_000115_280 Hb_000390_230--Hb_000115_280 Hb_000567_070 Hb_000567_070 Hb_000390_230--Hb_000567_070 Hb_000563_130 Hb_000563_130 Hb_000390_230--Hb_000563_130 Hb_138435_010 Hb_138435_010 Hb_000390_230--Hb_138435_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.22515 3.79547 7.11416 3.00342 7.13871 4.76085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96801 4.36953 3.15458 6.20816 5.14739

CAGE analysis