Hb_002234_130

Information

Type -
Description -
Location Contig2234: 107209-108968
Sequence    

Annotation

kegg
ID rcu:RCOM_1496940
description ATPP2-A13, putative
nr
ID XP_002510835.1
description ATPP2-A13, putative [Ricinus communis]
swissprot
ID Q9FJ80
description F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1
trembl
ID B9R9G0
description ATPP2-A13, putative OS=Ricinus communis GN=RCOM_1496940 PE=4 SV=1
Gene Ontology
ID GO:0030246
description f-box protein pp2-a13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23174: 108386-109000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_130 0.0 - - ATPP2-A13, putative [Ricinus communis]
2 Hb_009557_050 0.1484870528 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
3 Hb_000836_210 0.1649958668 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
4 Hb_002875_070 0.1690657585 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
5 Hb_000336_190 0.1699631911 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
6 Hb_001472_140 0.1811208217 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
7 Hb_009421_050 0.1870637479 - - PREDICTED: uncharacterized protein LOC105647037 [Jatropha curcas]
8 Hb_008406_030 0.1938348007 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
9 Hb_178658_010 0.1947792972 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
10 Hb_004724_330 0.195181314 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
11 Hb_001541_160 0.1962051762 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
12 Hb_001221_290 0.2010005814 - - hypothetical protein RCOM_1506010 [Ricinus communis]
13 Hb_000003_760 0.2019989225 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
14 Hb_017159_010 0.2031800033 - - -
15 Hb_001178_040 0.2053287769 desease resistance Gene Name: ABC_trans_N PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
16 Hb_002849_110 0.2080194557 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
17 Hb_001699_030 0.208959302 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
18 Hb_000975_370 0.209355142 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
19 Hb_000200_170 0.2099711802 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
20 Hb_001329_080 0.2109769611 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]

Gene co-expression network

sample Hb_002234_130 Hb_002234_130 Hb_009557_050 Hb_009557_050 Hb_002234_130--Hb_009557_050 Hb_000836_210 Hb_000836_210 Hb_002234_130--Hb_000836_210 Hb_002875_070 Hb_002875_070 Hb_002234_130--Hb_002875_070 Hb_000336_190 Hb_000336_190 Hb_002234_130--Hb_000336_190 Hb_001472_140 Hb_001472_140 Hb_002234_130--Hb_001472_140 Hb_009421_050 Hb_009421_050 Hb_002234_130--Hb_009421_050 Hb_008406_030 Hb_008406_030 Hb_009557_050--Hb_008406_030 Hb_004241_200 Hb_004241_200 Hb_009557_050--Hb_004241_200 Hb_000003_760 Hb_000003_760 Hb_009557_050--Hb_000003_760 Hb_009557_050--Hb_001472_140 Hb_019026_030 Hb_019026_030 Hb_009557_050--Hb_019026_030 Hb_002849_110 Hb_002849_110 Hb_000836_210--Hb_002849_110 Hb_000836_210--Hb_001472_140 Hb_000087_100 Hb_000087_100 Hb_000836_210--Hb_000087_100 Hb_178658_010 Hb_178658_010 Hb_000836_210--Hb_178658_010 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_002311_110 Hb_002311_110 Hb_000836_210--Hb_002311_110 Hb_005714_100 Hb_005714_100 Hb_002875_070--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_002875_070--Hb_000035_050 Hb_002759_260 Hb_002759_260 Hb_002875_070--Hb_002759_260 Hb_003849_190 Hb_003849_190 Hb_002875_070--Hb_003849_190 Hb_001133_010 Hb_001133_010 Hb_002875_070--Hb_001133_010 Hb_000009_200 Hb_000009_200 Hb_002875_070--Hb_000009_200 Hb_000336_190--Hb_178658_010 Hb_000336_190--Hb_000836_210 Hb_000336_190--Hb_000003_760 Hb_000336_190--Hb_002875_070 Hb_000336_190--Hb_002849_110 Hb_000336_190--Hb_001472_140 Hb_001329_080 Hb_001329_080 Hb_001472_140--Hb_001329_080 Hb_004297_080 Hb_004297_080 Hb_001472_140--Hb_004297_080 Hb_001472_140--Hb_008406_030 Hb_001472_140--Hb_002875_070 Hb_005408_080 Hb_005408_080 Hb_001472_140--Hb_005408_080 Hb_009421_050--Hb_178658_010 Hb_009421_050--Hb_000003_760 Hb_009421_050--Hb_009557_050 Hb_009421_050--Hb_001541_160 Hb_001956_190 Hb_001956_190 Hb_009421_050--Hb_001956_190 Hb_009421_050--Hb_000336_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.398279 27.5306 7.87892 25.133 0.304421 6.13797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5433 1.43423 2.99567 1.62239 5.11168

CAGE analysis