Hb_001198_170

Information

Type -
Description -
Location Contig1198: 146769-147179
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0047213
description anthocyanidin 3-o-glucosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001198_170 0.0 - - -
2 Hb_001257_120 0.06846729 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
3 Hb_002811_320 0.0694726197 - - cation-transporting atpase plant, putative [Ricinus communis]
4 Hb_155015_020 0.0832575914 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_000127_200 0.0989150351 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
6 Hb_000358_170 0.1018851494 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
7 Hb_002548_020 0.1131307552 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_004241_100 0.1145830036 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
9 Hb_172240_010 0.1168111528 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
10 Hb_000925_110 0.12093942 - - Spotted leaf protein, putative [Ricinus communis]
11 Hb_005946_200 0.1298493376 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
12 Hb_000714_080 0.1305055307 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
13 Hb_000904_110 0.131123693 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
14 Hb_002218_080 0.1319327542 - - Ankyrin repeat family protein, putative [Theobroma cacao]
15 Hb_006153_020 0.1340437855 - - vacuolar invertase [Manihot esculenta]
16 Hb_006002_020 0.1370256186 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
17 Hb_010369_010 0.1383884614 - - conserved hypothetical protein [Ricinus communis]
18 Hb_026048_030 0.1394701603 - - conserved hypothetical protein [Ricinus communis]
19 Hb_098175_010 0.1433493998 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
20 Hb_002110_050 0.1435000903 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001198_170 Hb_001198_170 Hb_001257_120 Hb_001257_120 Hb_001198_170--Hb_001257_120 Hb_002811_320 Hb_002811_320 Hb_001198_170--Hb_002811_320 Hb_155015_020 Hb_155015_020 Hb_001198_170--Hb_155015_020 Hb_000127_200 Hb_000127_200 Hb_001198_170--Hb_000127_200 Hb_000358_170 Hb_000358_170 Hb_001198_170--Hb_000358_170 Hb_002548_020 Hb_002548_020 Hb_001198_170--Hb_002548_020 Hb_001257_120--Hb_000358_170 Hb_172240_010 Hb_172240_010 Hb_001257_120--Hb_172240_010 Hb_001257_120--Hb_002811_320 Hb_001257_120--Hb_155015_020 Hb_098175_010 Hb_098175_010 Hb_001257_120--Hb_098175_010 Hb_002811_320--Hb_155015_020 Hb_005946_200 Hb_005946_200 Hb_002811_320--Hb_005946_200 Hb_112145_010 Hb_112145_010 Hb_002811_320--Hb_112145_010 Hb_004241_100 Hb_004241_100 Hb_002811_320--Hb_004241_100 Hb_155015_020--Hb_112145_010 Hb_155015_020--Hb_172240_010 Hb_000201_070 Hb_000201_070 Hb_155015_020--Hb_000201_070 Hb_000127_200--Hb_000358_170 Hb_000127_200--Hb_002548_020 Hb_000127_200--Hb_001257_120 Hb_000127_200--Hb_004241_100 Hb_001894_060 Hb_001894_060 Hb_000127_200--Hb_001894_060 Hb_010369_010 Hb_010369_010 Hb_000358_170--Hb_010369_010 Hb_003209_120 Hb_003209_120 Hb_000358_170--Hb_003209_120 Hb_004079_040 Hb_004079_040 Hb_000358_170--Hb_004079_040 Hb_002110_050 Hb_002110_050 Hb_002548_020--Hb_002110_050 Hb_002548_020--Hb_004241_100 Hb_002218_080 Hb_002218_080 Hb_002548_020--Hb_002218_080 Hb_070613_010 Hb_070613_010 Hb_002548_020--Hb_070613_010 Hb_160576_010 Hb_160576_010 Hb_002548_020--Hb_160576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.6143 1.36276 2.12869 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.263634

CAGE analysis