Hb_000392_250

Information

Type -
Description -
Location Contig392: 221404-223543
Sequence    

Annotation

kegg
ID rcu:RCOM_1514800
description Protein HVA22, putative
nr
ID XP_012080245.1
description PREDICTED: HVA22-like protein a [Jatropha curcas]
swissprot
ID Q9S7V4
description HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1
trembl
ID A0A067KG74
description HVA22-like protein OS=Jatropha curcas GN=JCGZ_11611 PE=3 SV=1
Gene Ontology
ID GO:0016021
description hva22-like protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39262: 221520-223548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_250 0.0 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
2 Hb_001754_050 0.0883377749 - - protein arginine n-methyltransferase, putative [Ricinus communis]
3 Hb_010534_020 0.1211565316 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
4 Hb_172706_020 0.1211832978 - - PREDICTED: protein ABIL2 [Jatropha curcas]
5 Hb_000622_330 0.1236800936 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
6 Hb_012053_020 0.1277570452 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
7 Hb_004218_130 0.1295639526 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
8 Hb_143766_080 0.1298426538 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
9 Hb_011671_120 0.1308112137 - - hypothetical protein JCGZ_26275 [Jatropha curcas]
10 Hb_000309_030 0.1309744313 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
11 Hb_000310_120 0.1336816563 - - PREDICTED: probable transaldolase [Jatropha curcas]
12 Hb_000057_130 0.1347540675 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
13 Hb_007575_030 0.1366753172 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
14 Hb_004129_010 0.1369016995 - - aspartate aminotransferase, putative [Ricinus communis]
15 Hb_002016_140 0.1372500088 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
16 Hb_000116_240 0.1391940955 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
17 Hb_000000_480 0.1401007925 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
18 Hb_010672_050 0.1402879796 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
19 Hb_012760_090 0.1427945196 - - Aspartic proteinase-like protein 1 [Morus notabilis]
20 Hb_004883_020 0.1429335577 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_250 Hb_000392_250 Hb_001754_050 Hb_001754_050 Hb_000392_250--Hb_001754_050 Hb_010534_020 Hb_010534_020 Hb_000392_250--Hb_010534_020 Hb_172706_020 Hb_172706_020 Hb_000392_250--Hb_172706_020 Hb_000622_330 Hb_000622_330 Hb_000392_250--Hb_000622_330 Hb_012053_020 Hb_012053_020 Hb_000392_250--Hb_012053_020 Hb_004218_130 Hb_004218_130 Hb_000392_250--Hb_004218_130 Hb_143766_080 Hb_143766_080 Hb_001754_050--Hb_143766_080 Hb_004129_010 Hb_004129_010 Hb_001754_050--Hb_004129_010 Hb_004883_020 Hb_004883_020 Hb_001754_050--Hb_004883_020 Hb_000057_130 Hb_000057_130 Hb_001754_050--Hb_000057_130 Hb_001754_050--Hb_004218_130 Hb_005271_140 Hb_005271_140 Hb_010534_020--Hb_005271_140 Hb_000300_100 Hb_000300_100 Hb_010534_020--Hb_000300_100 Hb_001232_090 Hb_001232_090 Hb_010534_020--Hb_001232_090 Hb_000757_130 Hb_000757_130 Hb_010534_020--Hb_000757_130 Hb_029253_010 Hb_029253_010 Hb_010534_020--Hb_029253_010 Hb_000940_210 Hb_000940_210 Hb_172706_020--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_172706_020--Hb_023226_030 Hb_002518_090 Hb_002518_090 Hb_172706_020--Hb_002518_090 Hb_034507_060 Hb_034507_060 Hb_172706_020--Hb_034507_060 Hb_172706_020--Hb_004218_130 Hb_000309_030 Hb_000309_030 Hb_172706_020--Hb_000309_030 Hb_010050_020 Hb_010050_020 Hb_000622_330--Hb_010050_020 Hb_000928_120 Hb_000928_120 Hb_000622_330--Hb_000928_120 Hb_006120_060 Hb_006120_060 Hb_000622_330--Hb_006120_060 Hb_002217_080 Hb_002217_080 Hb_000622_330--Hb_002217_080 Hb_000000_480 Hb_000000_480 Hb_000622_330--Hb_000000_480 Hb_004522_030 Hb_004522_030 Hb_000622_330--Hb_004522_030 Hb_007317_020 Hb_007317_020 Hb_012053_020--Hb_007317_020 Hb_007229_050 Hb_007229_050 Hb_012053_020--Hb_007229_050 Hb_000768_150 Hb_000768_150 Hb_012053_020--Hb_000768_150 Hb_098533_010 Hb_098533_010 Hb_012053_020--Hb_098533_010 Hb_036388_010 Hb_036388_010 Hb_012053_020--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_012053_020--Hb_004326_010 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_001545_130 Hb_001545_130 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28313 18.2299 46.7501 52.6781 3.84962 4.17626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7029 9.55698 2.7291 31.9546 31.2989

CAGE analysis