Hb_003784_050

Information

Type -
Description -
Location Contig3784: 42857-50055
Sequence    

Annotation

kegg
ID rcu:RCOM_0753650
description hypothetical protein
nr
ID XP_012074047.1
description PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
swissprot
ID Q8LFJ8
description Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana GN=RPA2B PE=2 SV=1
trembl
ID A0A067KJH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08660 PE=4 SV=1
Gene Ontology
ID GO:0003676
description replication family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38507: 46332-46725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003784_050 0.0 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
2 Hb_004209_030 0.1612711741 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
3 Hb_001434_070 0.1644697465 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
4 Hb_004567_020 0.1694571876 - - Small ubiquitin-related modifier 2 [Morus notabilis]
5 Hb_002526_020 0.1747188309 - - -
6 Hb_100180_010 0.1753945759 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
7 Hb_000281_230 0.1760643688 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
8 Hb_000617_110 0.187649626 - - translationally controlled tumor protein [Hevea brasiliensis]
9 Hb_000592_060 0.1887598253 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
10 Hb_004545_130 0.1903879853 - - uncharacterized protein LOC100305465 [Glycine max]
11 Hb_000453_300 0.191283275 - - latex cystatin [Hevea brasiliensis]
12 Hb_060618_010 0.1930896519 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
13 Hb_004429_110 0.1959133948 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
14 Hb_000431_160 0.1982762959 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
15 Hb_000260_200 0.2006266708 - - -
16 Hb_008887_040 0.2025177227 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
17 Hb_000819_070 0.2106660017 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
18 Hb_000879_210 0.2119773192 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
19 Hb_003376_290 0.2121064151 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
20 Hb_004635_060 0.2135449842 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]

Gene co-expression network

sample Hb_003784_050 Hb_003784_050 Hb_004209_030 Hb_004209_030 Hb_003784_050--Hb_004209_030 Hb_001434_070 Hb_001434_070 Hb_003784_050--Hb_001434_070 Hb_004567_020 Hb_004567_020 Hb_003784_050--Hb_004567_020 Hb_002526_020 Hb_002526_020 Hb_003784_050--Hb_002526_020 Hb_100180_010 Hb_100180_010 Hb_003784_050--Hb_100180_010 Hb_000281_230 Hb_000281_230 Hb_003784_050--Hb_000281_230 Hb_004209_030--Hb_001434_070 Hb_001377_380 Hb_001377_380 Hb_004209_030--Hb_001377_380 Hb_000260_200 Hb_000260_200 Hb_004209_030--Hb_000260_200 Hb_004545_130 Hb_004545_130 Hb_004209_030--Hb_004545_130 Hb_000635_080 Hb_000635_080 Hb_004209_030--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_004209_030--Hb_000780_210 Hb_001434_070--Hb_000260_200 Hb_001434_070--Hb_000635_080 Hb_003376_290 Hb_003376_290 Hb_001434_070--Hb_003376_290 Hb_001434_070--Hb_004545_130 Hb_000172_420 Hb_000172_420 Hb_001434_070--Hb_000172_420 Hb_120823_010 Hb_120823_010 Hb_004567_020--Hb_120823_010 Hb_004567_020--Hb_004545_130 Hb_000878_020 Hb_000878_020 Hb_004567_020--Hb_000878_020 Hb_000110_170 Hb_000110_170 Hb_004567_020--Hb_000110_170 Hb_147752_010 Hb_147752_010 Hb_004567_020--Hb_147752_010 Hb_007254_080 Hb_007254_080 Hb_004567_020--Hb_007254_080 Hb_011224_040 Hb_011224_040 Hb_002526_020--Hb_011224_040 Hb_002526_020--Hb_100180_010 Hb_003376_380 Hb_003376_380 Hb_002526_020--Hb_003376_380 Hb_000500_210 Hb_000500_210 Hb_002526_020--Hb_000500_210 Hb_000434_020 Hb_000434_020 Hb_002526_020--Hb_000434_020 Hb_004429_110 Hb_004429_110 Hb_100180_010--Hb_004429_110 Hb_100180_010--Hb_004567_020 Hb_001307_210 Hb_001307_210 Hb_100180_010--Hb_001307_210 Hb_007218_100 Hb_007218_100 Hb_100180_010--Hb_007218_100 Hb_000302_290 Hb_000302_290 Hb_100180_010--Hb_000302_290 Hb_002260_160 Hb_002260_160 Hb_100180_010--Hb_002260_160 Hb_001159_200 Hb_001159_200 Hb_000281_230--Hb_001159_200 Hb_004635_060 Hb_004635_060 Hb_000281_230--Hb_004635_060 Hb_001369_400 Hb_001369_400 Hb_000281_230--Hb_001369_400 Hb_000819_070 Hb_000819_070 Hb_000281_230--Hb_000819_070 Hb_000318_490 Hb_000318_490 Hb_000281_230--Hb_000318_490 Hb_004223_260 Hb_004223_260 Hb_000281_230--Hb_004223_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0554043 0.0483994 0.0515332 0.0208362 0.0677374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.903226 1.12171 0.276194 0.135164 0.153531

CAGE analysis