Hb_004724_430

Information

Type -
Description -
Location Contig4724: 273446-274459
Sequence    

Annotation

kegg
ID rcu:RCOM_1282250
description hypothetical protein
nr
ID XP_012087522.1
description PREDICTED: F-box protein At2g27310 [Jatropha curcas]
swissprot
ID Q9XIN8
description F-box protein At2g27310 OS=Arabidopsis thaliana GN=At2g27310 PE=2 SV=1
trembl
ID A0A067JQ63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24267 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at2g27310-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44395: 273362-274639
cDNA
(Sanger)
(ID:Location)		 040_C21.ab1: 273362-274047

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_430 0.0 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
2 Hb_001956_120 0.1029435469 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011537_040 0.1048271642 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
4 Hb_000347_080 0.105173644 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
5 Hb_000165_130 0.1079343266 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
6 Hb_012977_010 0.1086401554 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
7 Hb_000176_110 0.1157338783 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
8 Hb_164010_020 0.1175886096 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
9 Hb_003376_100 0.11924569 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
10 Hb_000028_050 0.1192895346 - - aldose-1-epimerase, putative [Ricinus communis]
11 Hb_000258_410 0.120928229 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
12 Hb_000566_140 0.1225582977 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
13 Hb_000732_020 0.1228154416 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
14 Hb_001348_140 0.1237258772 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002025_140 0.1241734688 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_000237_230 0.1253970953 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
17 Hb_003352_050 0.1255248342 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
18 Hb_004447_030 0.1266407029 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
19 Hb_009615_110 0.1269160603 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
20 Hb_025557_020 0.1274878716 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_430 Hb_004724_430 Hb_001956_120 Hb_001956_120 Hb_004724_430--Hb_001956_120 Hb_011537_040 Hb_011537_040 Hb_004724_430--Hb_011537_040 Hb_000347_080 Hb_000347_080 Hb_004724_430--Hb_000347_080 Hb_000165_130 Hb_000165_130 Hb_004724_430--Hb_000165_130 Hb_012977_010 Hb_012977_010 Hb_004724_430--Hb_012977_010 Hb_000176_110 Hb_000176_110 Hb_004724_430--Hb_000176_110 Hb_004374_010 Hb_004374_010 Hb_001956_120--Hb_004374_010 Hb_001956_120--Hb_000347_080 Hb_000976_270 Hb_000976_270 Hb_001956_120--Hb_000976_270 Hb_001956_120--Hb_011537_040 Hb_000062_230 Hb_000062_230 Hb_001956_120--Hb_000062_230 Hb_001663_110 Hb_001663_110 Hb_001956_120--Hb_001663_110 Hb_005271_070 Hb_005271_070 Hb_011537_040--Hb_005271_070 Hb_000258_410 Hb_000258_410 Hb_011537_040--Hb_000258_410 Hb_011537_040--Hb_004374_010 Hb_000282_150 Hb_000282_150 Hb_011537_040--Hb_000282_150 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060 Hb_000347_080--Hb_012977_010 Hb_000205_120 Hb_000205_120 Hb_000347_080--Hb_000205_120 Hb_004447_030 Hb_004447_030 Hb_000347_080--Hb_004447_030 Hb_000347_080--Hb_000976_270 Hb_004449_220 Hb_004449_220 Hb_000347_080--Hb_004449_220 Hb_002025_140 Hb_002025_140 Hb_000165_130--Hb_002025_140 Hb_000849_100 Hb_000849_100 Hb_000165_130--Hb_000849_100 Hb_000134_360 Hb_000134_360 Hb_000165_130--Hb_000134_360 Hb_001969_040 Hb_001969_040 Hb_000165_130--Hb_001969_040 Hb_002493_090 Hb_002493_090 Hb_000165_130--Hb_002493_090 Hb_000732_020 Hb_000732_020 Hb_000165_130--Hb_000732_020 Hb_005725_070 Hb_005725_070 Hb_012977_010--Hb_005725_070 Hb_012977_010--Hb_001969_040 Hb_007786_010 Hb_007786_010 Hb_012977_010--Hb_007786_010 Hb_000363_340 Hb_000363_340 Hb_012977_010--Hb_000363_340 Hb_012977_010--Hb_000165_130 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_003453_020 Hb_003453_020 Hb_000176_110--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.7216 9.05212 4.06954 10.7804 42.0809 38.2692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8386 12.3398 7.79444 2.96071 4.65275

CAGE analysis