Hb_001894_120

Information

Type -
Description -
Location Contig1894: 114591-117814
Sequence    

Annotation

kegg
ID rcu:RCOM_0528060
description nucleoredoxin, putative
nr
ID XP_002525369.1
description nucleoredoxin, putative [Ricinus communis]
swissprot
ID O80763
description Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1
trembl
ID B9SHA0
description Nucleoredoxin, putative OS=Ricinus communis GN=RCOM_0528060 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable nucleoredoxin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18814: 114612-117960
cDNA
(Sanger)
(ID:Location)		 036_D01.ab1: 114769-116492 , 040_D23.ab1: 114612-116180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_120 0.0 - - nucleoredoxin, putative [Ricinus communis]
2 Hb_000856_180 0.109764634 - - calcium-dependent protein kinase [Hevea brasiliensis]
3 Hb_003071_020 0.1148332838 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
4 Hb_013394_080 0.1162375042 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X2 [Jatropha curcas]
5 Hb_010222_070 0.1181439543 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
6 Hb_003373_030 0.1204203837 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
7 Hb_011311_020 0.124088839 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
8 Hb_000227_240 0.1250503593 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
9 Hb_006831_040 0.1257521887 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
10 Hb_004143_040 0.1258902622 - - argininosuccinate lyase, putative [Ricinus communis]
11 Hb_002276_130 0.1261491462 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
12 Hb_002046_020 0.1270462322 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
13 Hb_032808_030 0.1279790858 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_004117_310 0.1291301769 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
15 Hb_172632_110 0.1297475368 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
16 Hb_006663_030 0.1309872938 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_002391_210 0.1324926615 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
18 Hb_007850_090 0.1349351792 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
19 Hb_001123_290 0.1349594356 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
20 Hb_000941_130 0.1351488812 - - gamma-tubulin complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_001894_120 Hb_001894_120 Hb_000856_180 Hb_000856_180 Hb_001894_120--Hb_000856_180 Hb_003071_020 Hb_003071_020 Hb_001894_120--Hb_003071_020 Hb_013394_080 Hb_013394_080 Hb_001894_120--Hb_013394_080 Hb_010222_070 Hb_010222_070 Hb_001894_120--Hb_010222_070 Hb_003373_030 Hb_003373_030 Hb_001894_120--Hb_003373_030 Hb_011311_020 Hb_011311_020 Hb_001894_120--Hb_011311_020 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_002046_020 Hb_002046_020 Hb_000856_180--Hb_002046_020 Hb_000905_170 Hb_000905_170 Hb_000856_180--Hb_000905_170 Hb_000236_410 Hb_000236_410 Hb_000856_180--Hb_000236_410 Hb_000009_330 Hb_000009_330 Hb_000856_180--Hb_000009_330 Hb_006922_010 Hb_006922_010 Hb_003071_020--Hb_006922_010 Hb_003071_020--Hb_000236_410 Hb_003071_020--Hb_002046_020 Hb_001019_180 Hb_001019_180 Hb_003071_020--Hb_001019_180 Hb_001840_090 Hb_001840_090 Hb_003071_020--Hb_001840_090 Hb_003906_160 Hb_003906_160 Hb_013394_080--Hb_003906_160 Hb_002701_040 Hb_002701_040 Hb_013394_080--Hb_002701_040 Hb_013394_080--Hb_011311_020 Hb_002276_130 Hb_002276_130 Hb_013394_080--Hb_002276_130 Hb_156850_070 Hb_156850_070 Hb_013394_080--Hb_156850_070 Hb_003768_050 Hb_003768_050 Hb_010222_070--Hb_003768_050 Hb_000024_040 Hb_000024_040 Hb_010222_070--Hb_000024_040 Hb_001217_050 Hb_001217_050 Hb_010222_070--Hb_001217_050 Hb_002007_160 Hb_002007_160 Hb_010222_070--Hb_002007_160 Hb_000347_390 Hb_000347_390 Hb_010222_070--Hb_000347_390 Hb_002234_090 Hb_002234_090 Hb_010222_070--Hb_002234_090 Hb_004143_040 Hb_004143_040 Hb_003373_030--Hb_004143_040 Hb_008770_030 Hb_008770_030 Hb_003373_030--Hb_008770_030 Hb_000866_170 Hb_000866_170 Hb_003373_030--Hb_000866_170 Hb_032278_030 Hb_032278_030 Hb_003373_030--Hb_032278_030 Hb_015807_150 Hb_015807_150 Hb_003373_030--Hb_015807_150 Hb_000890_210 Hb_000890_210 Hb_003373_030--Hb_000890_210 Hb_000330_040 Hb_000330_040 Hb_011311_020--Hb_000330_040 Hb_009701_010 Hb_009701_010 Hb_011311_020--Hb_009701_010 Hb_073562_010 Hb_073562_010 Hb_011311_020--Hb_073562_010 Hb_000987_140 Hb_000987_140 Hb_011311_020--Hb_000987_140 Hb_010874_020 Hb_010874_020 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.993 47.8777 4.50761 26.1854 17.383 25.5709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.208 12.0188 31.7186 32.8452 10.0375

CAGE analysis