Hb_002571_070

Information

Type -
Description -
Location Contig2571: 79323-87346
Sequence    

Annotation

kegg
ID rcu:RCOM_1321040
description Sodium/potassium/calcium exchanger 6 precursor, putative
nr
ID XP_012070371.1
description PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
swissprot
ID Q9FKP2
description Cation/calcium exchanger 2 OS=Arabidopsis thaliana GN=CCX2 PE=3 SV=1
trembl
ID A0A067KU17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02662 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation calcium exchanger 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26759: 81003-81400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002571_070 0.0 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
2 Hb_000056_350 0.1071823304 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
3 Hb_001049_160 0.1417532956 - - aldose 1-epimerase, putative [Ricinus communis]
4 Hb_013405_100 0.160224329 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
5 Hb_000477_010 0.1643100409 - - PREDICTED: potassium channel AKT1-like [Jatropha curcas]
6 Hb_000521_100 0.1691832093 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002431_090 0.1708910867 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000692_230 0.1712801872 - - phospholipase d delta, putative [Ricinus communis]
9 Hb_000418_030 0.1744815896 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
10 Hb_001619_160 0.1761456876 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
11 Hb_002027_170 0.1764460759 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
12 Hb_050236_010 0.1767109472 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
13 Hb_000181_210 0.1796016336 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
14 Hb_001433_160 0.1804277373 - - phosphatase 2C family protein [Populus trichocarpa]
15 Hb_002324_050 0.1806195122 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
16 Hb_000832_280 0.1807911591 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
17 Hb_002324_040 0.1819814601 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
18 Hb_000116_290 0.1821365919 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
19 Hb_000002_360 0.182990318 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
20 Hb_000540_040 0.1838135139 - - PREDICTED: chitinase 2 [Amborella trichopoda]

Gene co-expression network

sample Hb_002571_070 Hb_002571_070 Hb_000056_350 Hb_000056_350 Hb_002571_070--Hb_000056_350 Hb_001049_160 Hb_001049_160 Hb_002571_070--Hb_001049_160 Hb_013405_100 Hb_013405_100 Hb_002571_070--Hb_013405_100 Hb_000477_010 Hb_000477_010 Hb_002571_070--Hb_000477_010 Hb_000521_100 Hb_000521_100 Hb_002571_070--Hb_000521_100 Hb_002431_090 Hb_002431_090 Hb_002571_070--Hb_002431_090 Hb_000832_280 Hb_000832_280 Hb_000056_350--Hb_000832_280 Hb_000181_210 Hb_000181_210 Hb_000056_350--Hb_000181_210 Hb_000059_300 Hb_000059_300 Hb_000056_350--Hb_000059_300 Hb_000540_040 Hb_000540_040 Hb_000056_350--Hb_000540_040 Hb_000002_360 Hb_000002_360 Hb_000056_350--Hb_000002_360 Hb_001619_160 Hb_001619_160 Hb_001049_160--Hb_001619_160 Hb_002027_170 Hb_002027_170 Hb_001049_160--Hb_002027_170 Hb_007382_100 Hb_007382_100 Hb_001049_160--Hb_007382_100 Hb_002876_250 Hb_002876_250 Hb_001049_160--Hb_002876_250 Hb_001486_200 Hb_001486_200 Hb_001049_160--Hb_001486_200 Hb_001318_140 Hb_001318_140 Hb_001049_160--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_013405_100--Hb_065525_010 Hb_002004_010 Hb_002004_010 Hb_013405_100--Hb_002004_010 Hb_097634_010 Hb_097634_010 Hb_013405_100--Hb_097634_010 Hb_013405_100--Hb_001318_140 Hb_013405_100--Hb_001619_160 Hb_005271_180 Hb_005271_180 Hb_013405_100--Hb_005271_180 Hb_000477_010--Hb_002431_090 Hb_003835_030 Hb_003835_030 Hb_000477_010--Hb_003835_030 Hb_002477_080 Hb_002477_080 Hb_000477_010--Hb_002477_080 Hb_000899_060 Hb_000899_060 Hb_000477_010--Hb_000899_060 Hb_008092_020 Hb_008092_020 Hb_000477_010--Hb_008092_020 Hb_002000_130 Hb_002000_130 Hb_000477_010--Hb_002000_130 Hb_001189_150 Hb_001189_150 Hb_000521_100--Hb_001189_150 Hb_000116_290 Hb_000116_290 Hb_000521_100--Hb_000116_290 Hb_003633_150 Hb_003633_150 Hb_000521_100--Hb_003633_150 Hb_000521_100--Hb_097634_010 Hb_182970_010 Hb_182970_010 Hb_000521_100--Hb_182970_010 Hb_000210_160 Hb_000210_160 Hb_000521_100--Hb_000210_160 Hb_189034_010 Hb_189034_010 Hb_002431_090--Hb_189034_010 Hb_002431_090--Hb_002477_080 Hb_000816_050 Hb_000816_050 Hb_002431_090--Hb_000816_050 Hb_002431_090--Hb_003835_030 Hb_002431_090--Hb_008092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0730542 7.98593 2.05286 7.21763 0 0.0344195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.772278 1.08951 0.316472 3.48972 3.21704

CAGE analysis