Hb_000521_100

Information

Type -
Description -
Location Contig521: 64849-65076
Sequence    

Annotation

kegg
ID rcu:RCOM_1775700
description hypothetical protein
nr
ID XP_002512191.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775700 PE=4 SV=1
Gene Ontology
ID GO:0016021
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001189_150 0.1026781532 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
3 Hb_000116_290 0.1439421028 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
4 Hb_003633_150 0.1463946455 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
5 Hb_097634_010 0.1484639934 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
6 Hb_182970_010 0.15212895 - - calmodulin-binding protein 60-D [Populus trichocarpa]
7 Hb_000210_160 0.1569381728 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_005282_010 0.1611259749 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
9 Hb_001195_650 0.1667520286 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
10 Hb_012272_010 0.1669776784 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_001587_220 0.1674538374 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_013405_100 0.1675742812 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
13 Hb_004282_040 0.167939736 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
14 Hb_009476_110 0.1686217832 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
15 Hb_006573_280 0.1686552992 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
16 Hb_008406_030 0.1688769805 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_002571_070 0.1691832093 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
18 Hb_000692_230 0.1701635656 - - phospholipase d delta, putative [Ricinus communis]
19 Hb_002311_110 0.1712529558 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000024_020 0.1715935375 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_100 Hb_000521_100 Hb_001189_150 Hb_001189_150 Hb_000521_100--Hb_001189_150 Hb_000116_290 Hb_000116_290 Hb_000521_100--Hb_000116_290 Hb_003633_150 Hb_003633_150 Hb_000521_100--Hb_003633_150 Hb_097634_010 Hb_097634_010 Hb_000521_100--Hb_097634_010 Hb_182970_010 Hb_182970_010 Hb_000521_100--Hb_182970_010 Hb_000210_160 Hb_000210_160 Hb_000521_100--Hb_000210_160 Hb_001832_070 Hb_001832_070 Hb_001189_150--Hb_001832_070 Hb_012272_010 Hb_012272_010 Hb_001189_150--Hb_012272_010 Hb_001189_150--Hb_003633_150 Hb_000836_220 Hb_000836_220 Hb_001189_150--Hb_000836_220 Hb_003864_020 Hb_003864_020 Hb_001189_150--Hb_003864_020 Hb_000976_340 Hb_000976_340 Hb_000116_290--Hb_000976_340 Hb_000094_010 Hb_000094_010 Hb_000116_290--Hb_000094_010 Hb_000589_330 Hb_000589_330 Hb_000116_290--Hb_000589_330 Hb_050236_010 Hb_050236_010 Hb_000116_290--Hb_050236_010 Hb_001248_170 Hb_001248_170 Hb_000116_290--Hb_001248_170 Hb_004282_040 Hb_004282_040 Hb_000116_290--Hb_004282_040 Hb_009476_110 Hb_009476_110 Hb_003633_150--Hb_009476_110 Hb_001247_160 Hb_001247_160 Hb_003633_150--Hb_001247_160 Hb_005282_010 Hb_005282_010 Hb_003633_150--Hb_005282_010 Hb_003633_150--Hb_182970_010 Hb_000567_110 Hb_000567_110 Hb_003633_150--Hb_000567_110 Hb_001405_060 Hb_001405_060 Hb_003633_150--Hb_001405_060 Hb_000892_030 Hb_000892_030 Hb_097634_010--Hb_000892_030 Hb_010417_110 Hb_010417_110 Hb_097634_010--Hb_010417_110 Hb_010174_200 Hb_010174_200 Hb_097634_010--Hb_010174_200 Hb_097634_010--Hb_000567_110 Hb_004109_110 Hb_004109_110 Hb_097634_010--Hb_004109_110 Hb_000638_180 Hb_000638_180 Hb_097634_010--Hb_000638_180 Hb_002400_040 Hb_002400_040 Hb_182970_010--Hb_002400_040 Hb_001329_080 Hb_001329_080 Hb_182970_010--Hb_001329_080 Hb_001226_170 Hb_001226_170 Hb_182970_010--Hb_001226_170 Hb_003209_090 Hb_003209_090 Hb_182970_010--Hb_003209_090 Hb_005408_080 Hb_005408_080 Hb_182970_010--Hb_005408_080 Hb_000563_630 Hb_000563_630 Hb_000210_160--Hb_000563_630 Hb_001675_310 Hb_001675_310 Hb_000210_160--Hb_001675_310 Hb_003849_200 Hb_003849_200 Hb_000210_160--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_000210_160--Hb_003435_040 Hb_034507_090 Hb_034507_090 Hb_000210_160--Hb_034507_090 Hb_000152_170 Hb_000152_170 Hb_000210_160--Hb_000152_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.410067 19.4984 6.14185 15.3576 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.856525 1.36819 0 3.21843 4.30541

CAGE analysis