Hb_001584_340

Information

Type -
Description -
Location Contig1584: 193937-199751
Sequence    

Annotation

kegg
ID rcu:RCOM_1436330
description ATP-citrate synthase, putative (EC:6.2.1.5)
nr
ID XP_012088841.1
description PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]
swissprot
ID Q2QZ86
description ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2
trembl
ID A0A067JHL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23180 PE=4 SV=1
Gene Ontology
ID GO:0009346
description atp-citrate synthase alpha chain protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14003: 193994-199696 , PASA_asmbl_14004: 194143-199590 , PASA_asmbl_14005: 193997-194798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_340 0.0 - - PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]
2 Hb_000014_040 0.1201020433 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000328_050 0.1257363679 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
4 Hb_014497_060 0.127792998 - - phosphofructokinase, putative [Ricinus communis]
5 Hb_003052_030 0.1279158481 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
6 Hb_004046_030 0.1375561975 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
7 Hb_000739_210 0.1395966364 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
8 Hb_000256_110 0.1396106904 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
9 Hb_001104_130 0.1415886826 - - C-14 sterol reductase, putative [Ricinus communis]
10 Hb_002928_090 0.1416679551 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
11 Hb_002902_140 0.1431395856 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
12 Hb_000062_510 0.144517483 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
13 Hb_010288_060 0.1472248909 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
14 Hb_003602_020 0.1478773012 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]
15 Hb_009078_030 0.1484510686 - - hypothetical protein PRUPE_ppa016992mg, partial [Prunus persica]
16 Hb_012678_020 0.1497555593 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
17 Hb_000399_060 0.1504824383 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
18 Hb_023988_030 0.1519258236 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
19 Hb_000007_060 0.152202106 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
20 Hb_000629_070 0.1528274058 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001584_340 Hb_001584_340 Hb_000014_040 Hb_000014_040 Hb_001584_340--Hb_000014_040 Hb_000328_050 Hb_000328_050 Hb_001584_340--Hb_000328_050 Hb_014497_060 Hb_014497_060 Hb_001584_340--Hb_014497_060 Hb_003052_030 Hb_003052_030 Hb_001584_340--Hb_003052_030 Hb_004046_030 Hb_004046_030 Hb_001584_340--Hb_004046_030 Hb_000739_210 Hb_000739_210 Hb_001584_340--Hb_000739_210 Hb_002928_090 Hb_002928_090 Hb_000014_040--Hb_002928_090 Hb_001051_050 Hb_001051_050 Hb_000014_040--Hb_001051_050 Hb_000390_050 Hb_000390_050 Hb_000014_040--Hb_000390_050 Hb_170138_010 Hb_170138_010 Hb_000014_040--Hb_170138_010 Hb_000399_060 Hb_000399_060 Hb_000014_040--Hb_000399_060 Hb_000684_210 Hb_000684_210 Hb_000014_040--Hb_000684_210 Hb_000328_050--Hb_000014_040 Hb_003642_010 Hb_003642_010 Hb_000328_050--Hb_003642_010 Hb_006006_060 Hb_006006_060 Hb_000328_050--Hb_006006_060 Hb_016219_010 Hb_016219_010 Hb_000328_050--Hb_016219_010 Hb_003777_250 Hb_003777_250 Hb_000328_050--Hb_003777_250 Hb_000256_110 Hb_000256_110 Hb_014497_060--Hb_000256_110 Hb_002026_070 Hb_002026_070 Hb_014497_060--Hb_002026_070 Hb_002902_140 Hb_002902_140 Hb_014497_060--Hb_002902_140 Hb_002232_490 Hb_002232_490 Hb_014497_060--Hb_002232_490 Hb_002631_130 Hb_002631_130 Hb_014497_060--Hb_002631_130 Hb_000922_260 Hb_000922_260 Hb_014497_060--Hb_000922_260 Hb_012678_020 Hb_012678_020 Hb_003052_030--Hb_012678_020 Hb_001006_270 Hb_001006_270 Hb_003052_030--Hb_001006_270 Hb_004525_040 Hb_004525_040 Hb_003052_030--Hb_004525_040 Hb_002902_130 Hb_002902_130 Hb_003052_030--Hb_002902_130 Hb_033152_070 Hb_033152_070 Hb_003052_030--Hb_033152_070 Hb_003052_180 Hb_003052_180 Hb_003052_030--Hb_003052_180 Hb_003206_110 Hb_003206_110 Hb_004046_030--Hb_003206_110 Hb_006277_010 Hb_006277_010 Hb_004046_030--Hb_006277_010 Hb_004046_030--Hb_170138_010 Hb_000185_220 Hb_000185_220 Hb_004046_030--Hb_000185_220 Hb_000800_090 Hb_000800_090 Hb_004046_030--Hb_000800_090 Hb_004046_030--Hb_012678_020 Hb_000739_210--Hb_000256_110 Hb_000896_050 Hb_000896_050 Hb_000739_210--Hb_000896_050 Hb_000008_350 Hb_000008_350 Hb_000739_210--Hb_000008_350 Hb_000062_510 Hb_000062_510 Hb_000739_210--Hb_000062_510 Hb_010288_060 Hb_010288_060 Hb_000739_210--Hb_010288_060 Hb_004339_030 Hb_004339_030 Hb_000739_210--Hb_004339_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8873 12.3336 39.8146 114.759 24.2802 38.2145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.5864 16.8141 18.8722 78.606 125.692

CAGE analysis