Hb_003488_040

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig3488: 89737-90420
Sequence    

Annotation

kegg
ID cit:102607711
description nuclear transcription factor Y subunit B-3-like
nr
ID AGE10680.1
description nuclear transcription factor YB7 [Populus nigra x Populus x canadensis]
swissprot
ID O23310
description Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1
trembl
ID T1QYV9
description Nuclear transcription factor YB7 OS=Populus nigra x Populus x canadensis GN=NFYB7 PE=2 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003488_040 0.0 transcription factor TF Family: NF-YB nuclear transcription factor YB7 [Populus nigra x Populus x canadensis]
2 Hb_001268_150 0.1190555296 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_002973_050 0.1242523471 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
4 Hb_068804_180 0.1277189137 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
5 Hb_001950_100 0.129810142 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
6 Hb_000453_020 0.1366763308 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_002168_070 0.1380726801 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
8 Hb_004917_020 0.1411725396 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
9 Hb_133974_010 0.1415447365 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
10 Hb_000045_080 0.1422894377 - - amino acid transporter, putative [Ricinus communis]
11 Hb_017862_030 0.1440932702 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
12 Hb_002894_080 0.1472489999 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002284_060 0.1484104536 - - sugar transporter, putative [Ricinus communis]
14 Hb_003266_010 0.1488595794 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
15 Hb_002043_070 0.1490558728 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
16 Hb_002053_190 0.1501342881 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
17 Hb_011161_090 0.1515284182 - - -
18 Hb_000000_050 0.15154479 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000622_030 0.1516569708 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
20 Hb_000434_060 0.1522461579 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003488_040 Hb_003488_040 Hb_001268_150 Hb_001268_150 Hb_003488_040--Hb_001268_150 Hb_002973_050 Hb_002973_050 Hb_003488_040--Hb_002973_050 Hb_068804_180 Hb_068804_180 Hb_003488_040--Hb_068804_180 Hb_001950_100 Hb_001950_100 Hb_003488_040--Hb_001950_100 Hb_000453_020 Hb_000453_020 Hb_003488_040--Hb_000453_020 Hb_002168_070 Hb_002168_070 Hb_003488_040--Hb_002168_070 Hb_000160_250 Hb_000160_250 Hb_001268_150--Hb_000160_250 Hb_001206_100 Hb_001206_100 Hb_001268_150--Hb_001206_100 Hb_002942_200 Hb_002942_200 Hb_001268_150--Hb_002942_200 Hb_000364_090 Hb_000364_090 Hb_001268_150--Hb_000364_090 Hb_002284_060 Hb_002284_060 Hb_001268_150--Hb_002284_060 Hb_000290_030 Hb_000290_030 Hb_001268_150--Hb_000290_030 Hb_133974_010 Hb_133974_010 Hb_002973_050--Hb_133974_010 Hb_004917_020 Hb_004917_020 Hb_002973_050--Hb_004917_020 Hb_002835_070 Hb_002835_070 Hb_002973_050--Hb_002835_070 Hb_001279_400 Hb_001279_400 Hb_002973_050--Hb_001279_400 Hb_005711_030 Hb_005711_030 Hb_002973_050--Hb_005711_030 Hb_000813_070 Hb_000813_070 Hb_002973_050--Hb_000813_070 Hb_002598_040 Hb_002598_040 Hb_068804_180--Hb_002598_040 Hb_154038_040 Hb_154038_040 Hb_068804_180--Hb_154038_040 Hb_017700_030 Hb_017700_030 Hb_068804_180--Hb_017700_030 Hb_001688_030 Hb_001688_030 Hb_068804_180--Hb_001688_030 Hb_000816_150 Hb_000816_150 Hb_068804_180--Hb_000816_150 Hb_000384_020 Hb_000384_020 Hb_068804_180--Hb_000384_020 Hb_000622_030 Hb_000622_030 Hb_001950_100--Hb_000622_030 Hb_000023_180 Hb_000023_180 Hb_001950_100--Hb_000023_180 Hb_001232_040 Hb_001232_040 Hb_001950_100--Hb_001232_040 Hb_000000_290 Hb_000000_290 Hb_001950_100--Hb_000000_290 Hb_005725_160 Hb_005725_160 Hb_001950_100--Hb_005725_160 Hb_001950_100--Hb_002168_070 Hb_000482_120 Hb_000482_120 Hb_000453_020--Hb_000482_120 Hb_003029_120 Hb_003029_120 Hb_000453_020--Hb_003029_120 Hb_010337_040 Hb_010337_040 Hb_000453_020--Hb_010337_040 Hb_002184_080 Hb_002184_080 Hb_000453_020--Hb_002184_080 Hb_012539_100 Hb_012539_100 Hb_000453_020--Hb_012539_100 Hb_009771_040 Hb_009771_040 Hb_002168_070--Hb_009771_040 Hb_002043_070 Hb_002043_070 Hb_002168_070--Hb_002043_070 Hb_000434_060 Hb_000434_060 Hb_002168_070--Hb_000434_060 Hb_002053_190 Hb_002053_190 Hb_002168_070--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002168_070--Hb_001405_170 Hb_005211_210 Hb_005211_210 Hb_002168_070--Hb_005211_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.6176 0.559234 1.97275 0 0.128371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.240796 1.29541

CAGE analysis