Hb_068804_180

Information

Type -
Description -
Location Contig68804: 126164-126587
Sequence    

Annotation

kegg
ID bvg:104888117
description TRAF-type zinc finger domain-containing protein 1
nr
ID XP_010671290.1
description PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
swissprot
ID Q3UDK1
description TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1
trembl
ID V4T6D7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002525mg PE=4 SV=1
Gene Ontology
ID GO:0006810
description traf-type zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_180 0.0 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
2 Hb_002598_040 0.1012235734 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
3 Hb_154038_040 0.113633957 - - nutrient reservoir, putative [Ricinus communis]
4 Hb_017700_030 0.1186981565 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
5 Hb_001688_030 0.119754488 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
6 Hb_000816_150 0.1209138255 - - oligopeptide transporter, putative [Ricinus communis]
7 Hb_000384_020 0.1211887819 - - sucrose phosphate syntase, putative [Ricinus communis]
8 Hb_003488_040 0.1277189137 transcription factor TF Family: NF-YB nuclear transcription factor YB7 [Populus nigra x Populus x canadensis]
9 Hb_002960_030 0.1301465381 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
10 Hb_008021_050 0.1306341157 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000087_190 0.1334761588 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
12 Hb_122951_010 0.1349376598 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
13 Hb_017862_030 0.1360297167 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
14 Hb_114733_010 0.1378890135 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
15 Hb_001117_180 0.1405718394 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
16 Hb_000327_320 0.1409717483 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
17 Hb_000403_100 0.1414760667 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
18 Hb_000137_050 0.1419450895 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002053_190 0.1420191075 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
20 Hb_000453_020 0.1437823203 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_068804_180 Hb_068804_180 Hb_002598_040 Hb_002598_040 Hb_068804_180--Hb_002598_040 Hb_154038_040 Hb_154038_040 Hb_068804_180--Hb_154038_040 Hb_017700_030 Hb_017700_030 Hb_068804_180--Hb_017700_030 Hb_001688_030 Hb_001688_030 Hb_068804_180--Hb_001688_030 Hb_000816_150 Hb_000816_150 Hb_068804_180--Hb_000816_150 Hb_000384_020 Hb_000384_020 Hb_068804_180--Hb_000384_020 Hb_002598_040--Hb_017700_030 Hb_000403_100 Hb_000403_100 Hb_002598_040--Hb_000403_100 Hb_001999_200 Hb_001999_200 Hb_002598_040--Hb_001999_200 Hb_114733_010 Hb_114733_010 Hb_002598_040--Hb_114733_010 Hb_002598_040--Hb_000816_150 Hb_001117_180 Hb_001117_180 Hb_154038_040--Hb_001117_180 Hb_000028_550 Hb_000028_550 Hb_154038_040--Hb_000028_550 Hb_154038_040--Hb_000384_020 Hb_154038_040--Hb_001688_030 Hb_004558_060 Hb_004558_060 Hb_154038_040--Hb_004558_060 Hb_002518_020 Hb_002518_020 Hb_154038_040--Hb_002518_020 Hb_017700_030--Hb_000816_150 Hb_017700_030--Hb_114733_010 Hb_017700_030--Hb_000403_100 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_008021_050 Hb_008021_050 Hb_001688_030--Hb_008021_050 Hb_000093_010 Hb_000093_010 Hb_001688_030--Hb_000093_010 Hb_001360_020 Hb_001360_020 Hb_001688_030--Hb_001360_020 Hb_002384_030 Hb_002384_030 Hb_001688_030--Hb_002384_030 Hb_133492_010 Hb_133492_010 Hb_001688_030--Hb_133492_010 Hb_000816_150--Hb_000384_020 Hb_000468_050 Hb_000468_050 Hb_000816_150--Hb_000468_050 Hb_000816_150--Hb_114733_010 Hb_009225_070 Hb_009225_070 Hb_000816_150--Hb_009225_070 Hb_000991_080 Hb_000991_080 Hb_000816_150--Hb_000991_080 Hb_173107_020 Hb_173107_020 Hb_000384_020--Hb_173107_020 Hb_000384_020--Hb_114733_010 Hb_000384_020--Hb_000991_080 Hb_000162_070 Hb_000162_070 Hb_000384_020--Hb_000162_070 Hb_000045_080 Hb_000045_080 Hb_000384_020--Hb_000045_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.706072 0.468721 2.23883 0 0.102651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.184859 0.692752

CAGE analysis