Hb_000152_530

Information

Type -
Description -
Location Contig152: 456480-458732
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_231485
description hypothetical protein
nr
ID XP_002969845.1
description hypothetical protein SELMODRAFT_231485 [Selaginella moellendorffii]
swissprot
ID -
description -
trembl
ID M0S7C1
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0003676
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13014: 457679-458082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_530 0.0 - - hypothetical protein SELMODRAFT_231485 [Selaginella moellendorffii]
2 Hb_000392_210 0.1146333267 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
3 Hb_002119_110 0.1329766078 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
4 Hb_000008_070 0.1475269601 - - kinase, putative [Ricinus communis]
5 Hb_000130_140 0.1502610724 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
6 Hb_010620_030 0.1506904122 - - beta-amyrin synthase [Euphorbia tirucalli]
7 Hb_000056_110 0.1509862372 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
8 Hb_001999_070 0.1537348966 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
9 Hb_001278_020 0.1549243096 - - sucrose synthase 6 [Hevea brasiliensis]
10 Hb_000083_080 0.1575180438 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
11 Hb_010222_040 0.1586011046 - - PREDICTED: kinesin-2 [Jatropha curcas]
12 Hb_003849_070 0.1586918293 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
13 Hb_000333_030 0.1600860817 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_003097_220 0.1601322762 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
15 Hb_012484_050 0.1610773532 - - PREDICTED: kinesin KP1 [Jatropha curcas]
16 Hb_000963_120 0.1617293659 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
17 Hb_001951_080 0.1623505013 - - O-acetyltransferase, putative [Ricinus communis]
18 Hb_001357_050 0.1651575846 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
19 Hb_012239_060 0.1653024116 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
20 Hb_001268_150 0.1672938604 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_530 Hb_000152_530 Hb_000392_210 Hb_000392_210 Hb_000152_530--Hb_000392_210 Hb_002119_110 Hb_002119_110 Hb_000152_530--Hb_002119_110 Hb_000008_070 Hb_000008_070 Hb_000152_530--Hb_000008_070 Hb_000130_140 Hb_000130_140 Hb_000152_530--Hb_000130_140 Hb_010620_030 Hb_010620_030 Hb_000152_530--Hb_010620_030 Hb_000056_110 Hb_000056_110 Hb_000152_530--Hb_000056_110 Hb_000392_210--Hb_000130_140 Hb_010222_060 Hb_010222_060 Hb_000392_210--Hb_010222_060 Hb_003097_220 Hb_003097_220 Hb_000392_210--Hb_003097_220 Hb_031862_120 Hb_031862_120 Hb_000392_210--Hb_031862_120 Hb_002713_060 Hb_002713_060 Hb_000392_210--Hb_002713_060 Hb_000963_120 Hb_000963_120 Hb_002119_110--Hb_000963_120 Hb_004374_030 Hb_004374_030 Hb_002119_110--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_002119_110--Hb_016277_030 Hb_000784_060 Hb_000784_060 Hb_002119_110--Hb_000784_060 Hb_004032_190 Hb_004032_190 Hb_002119_110--Hb_004032_190 Hb_012239_060 Hb_012239_060 Hb_002119_110--Hb_012239_060 Hb_001257_050 Hb_001257_050 Hb_000008_070--Hb_001257_050 Hb_000139_060 Hb_000139_060 Hb_000008_070--Hb_000139_060 Hb_001278_020 Hb_001278_020 Hb_000008_070--Hb_001278_020 Hb_001541_200 Hb_001541_200 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_001474_060 Hb_001474_060 Hb_000008_070--Hb_001474_060 Hb_000083_080 Hb_000083_080 Hb_000130_140--Hb_000083_080 Hb_016924_010 Hb_016924_010 Hb_000130_140--Hb_016924_010 Hb_000103_230 Hb_000103_230 Hb_000130_140--Hb_000103_230 Hb_001100_070 Hb_001100_070 Hb_000130_140--Hb_001100_070 Hb_000627_050 Hb_000627_050 Hb_000130_140--Hb_000627_050 Hb_001124_230 Hb_001124_230 Hb_010620_030--Hb_001124_230 Hb_000552_010 Hb_000552_010 Hb_010620_030--Hb_000552_010 Hb_006483_120 Hb_006483_120 Hb_010620_030--Hb_006483_120 Hb_003849_070 Hb_003849_070 Hb_010620_030--Hb_003849_070 Hb_010620_030--Hb_000056_110 Hb_000439_020 Hb_000439_020 Hb_010620_030--Hb_000439_020 Hb_034507_050 Hb_034507_050 Hb_000056_110--Hb_034507_050 Hb_000787_210 Hb_000787_210 Hb_000056_110--Hb_000787_210 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_001252_030 Hb_001252_030 Hb_000056_110--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000056_110--Hb_020141_030 Hb_001677_040 Hb_001677_040 Hb_000056_110--Hb_001677_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6236 2.92954 5.37491 13.7196 0.195009 0.66876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118747 0.0155729 0 2.33326 15.1227

CAGE analysis