Hb_000031_100

Information

Type -
Description -
Location Contig31: 84766-86235
Sequence    

Annotation

kegg
ID rcu:RCOM_0918760
description amine oxidase, putative
nr
ID XP_002515342.1
description amine oxidase, putative [Ricinus communis]
swissprot
ID Q8S9J1
description Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PPOX2 PE=1 SV=1
trembl
ID B9RNM3
description Amine oxidase, putative OS=Ricinus communis GN=RCOM_0918760 PE=4 SV=1
Gene Ontology
ID GO:0016491
description phytoene chloroplastic chromoplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 053_E22.ab1: 85441-86250

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_100 0.0 - - amine oxidase, putative [Ricinus communis]
2 Hb_003862_040 0.1382784296 - - Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_050514_020 0.146827389 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
4 Hb_006846_160 0.1565692705 - - electron transporter, putative [Ricinus communis]
5 Hb_003664_030 0.157409822 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
6 Hb_002799_130 0.1639498612 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
7 Hb_001343_020 0.1683742891 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000933_110 0.1688111984 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
9 Hb_000836_350 0.1697235651 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
10 Hb_003376_390 0.1717367324 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
11 Hb_148146_010 0.1717524225 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
12 Hb_137600_010 0.171863689 - - 50S ribosomal protein L1p, putative [Ricinus communis]
13 Hb_005074_050 0.1718908612 - - PREDICTED: myosin-6-like [Jatropha curcas]
14 Hb_005000_060 0.1720611436 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
15 Hb_000934_260 0.1728813383 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_005015_020 0.1739567516 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_000479_210 0.1742663626 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
18 Hb_002928_030 0.1776933377 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
19 Hb_001649_030 0.1779442767 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
20 Hb_173660_010 0.1783989562 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]

Gene co-expression network

sample Hb_000031_100 Hb_000031_100 Hb_003862_040 Hb_003862_040 Hb_000031_100--Hb_003862_040 Hb_050514_020 Hb_050514_020 Hb_000031_100--Hb_050514_020 Hb_006846_160 Hb_006846_160 Hb_000031_100--Hb_006846_160 Hb_003664_030 Hb_003664_030 Hb_000031_100--Hb_003664_030 Hb_002799_130 Hb_002799_130 Hb_000031_100--Hb_002799_130 Hb_001343_020 Hb_001343_020 Hb_000031_100--Hb_001343_020 Hb_001638_310 Hb_001638_310 Hb_003862_040--Hb_001638_310 Hb_005000_060 Hb_005000_060 Hb_003862_040--Hb_005000_060 Hb_003862_040--Hb_006846_160 Hb_148146_010 Hb_148146_010 Hb_003862_040--Hb_148146_010 Hb_000934_260 Hb_000934_260 Hb_003862_040--Hb_000934_260 Hb_003470_100 Hb_003470_100 Hb_050514_020--Hb_003470_100 Hb_050514_020--Hb_000934_260 Hb_050514_020--Hb_005000_060 Hb_001999_260 Hb_001999_260 Hb_050514_020--Hb_001999_260 Hb_009545_070 Hb_009545_070 Hb_050514_020--Hb_009545_070 Hb_000637_070 Hb_000637_070 Hb_050514_020--Hb_000637_070 Hb_002498_170 Hb_002498_170 Hb_006846_160--Hb_002498_170 Hb_006846_160--Hb_000934_260 Hb_000322_040 Hb_000322_040 Hb_006846_160--Hb_000322_040 Hb_006252_030 Hb_006252_030 Hb_006846_160--Hb_006252_030 Hb_000538_130 Hb_000538_130 Hb_006846_160--Hb_000538_130 Hb_000264_280 Hb_000264_280 Hb_003664_030--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_003664_030--Hb_003948_020 Hb_005784_030 Hb_005784_030 Hb_003664_030--Hb_005784_030 Hb_003664_030--Hb_148146_010 Hb_003752_090 Hb_003752_090 Hb_003664_030--Hb_003752_090 Hb_000834_060 Hb_000834_060 Hb_003664_030--Hb_000834_060 Hb_005015_020 Hb_005015_020 Hb_002799_130--Hb_005015_020 Hb_000933_110 Hb_000933_110 Hb_002799_130--Hb_000933_110 Hb_002928_030 Hb_002928_030 Hb_002799_130--Hb_002928_030 Hb_003376_390 Hb_003376_390 Hb_002799_130--Hb_003376_390 Hb_003929_220 Hb_003929_220 Hb_002799_130--Hb_003929_220 Hb_004324_120 Hb_004324_120 Hb_002799_130--Hb_004324_120 Hb_000548_060 Hb_000548_060 Hb_001343_020--Hb_000548_060 Hb_000368_120 Hb_000368_120 Hb_001343_020--Hb_000368_120 Hb_001343_020--Hb_000264_280 Hb_000175_050 Hb_000175_050 Hb_001343_020--Hb_000175_050 Hb_011053_030 Hb_011053_030 Hb_001343_020--Hb_011053_030 Hb_000032_390 Hb_000032_390 Hb_001343_020--Hb_000032_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95956 12.4146 30.3083 9.88188 6.24177 0.436349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05956 5.00434 1.27467 0.973946 31.0658

CAGE analysis