Hb_010487_020

Information

Type -
Description -
Location Contig10487: 1983-5703
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID KDP27374.1
description hypothetical protein JCGZ_20198 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0016301
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01660: 2522-4192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010487_020 0.0 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
2 Hb_000735_160 0.0920215703 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
3 Hb_013399_070 0.1079660413 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
4 Hb_001080_230 0.1131169546 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
5 Hb_004371_010 0.1134099411 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
6 Hb_001821_090 0.1142328569 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
7 Hb_004483_040 0.1146688092 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
8 Hb_000061_510 0.1152940972 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
9 Hb_000069_410 0.115329231 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
10 Hb_000788_070 0.1167406487 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
11 Hb_012184_060 0.1168407608 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
12 Hb_003060_090 0.1175553333 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
13 Hb_141918_010 0.1190565858 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
14 Hb_003058_060 0.1193527325 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
15 Hb_001614_060 0.1204457512 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
16 Hb_000322_150 0.120552724 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
17 Hb_003768_050 0.1220994435 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
18 Hb_000083_270 0.1223189893 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
19 Hb_001104_190 0.1223229566 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
20 Hb_005496_110 0.1223576368 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]

Gene co-expression network

sample Hb_010487_020 Hb_010487_020 Hb_000735_160 Hb_000735_160 Hb_010487_020--Hb_000735_160 Hb_013399_070 Hb_013399_070 Hb_010487_020--Hb_013399_070 Hb_001080_230 Hb_001080_230 Hb_010487_020--Hb_001080_230 Hb_004371_010 Hb_004371_010 Hb_010487_020--Hb_004371_010 Hb_001821_090 Hb_001821_090 Hb_010487_020--Hb_001821_090 Hb_004483_040 Hb_004483_040 Hb_010487_020--Hb_004483_040 Hb_000735_160--Hb_004371_010 Hb_000347_120 Hb_000347_120 Hb_000735_160--Hb_000347_120 Hb_000094_320 Hb_000094_320 Hb_000735_160--Hb_000094_320 Hb_000925_160 Hb_000925_160 Hb_000735_160--Hb_000925_160 Hb_000735_160--Hb_001080_230 Hb_000170_150 Hb_000170_150 Hb_013399_070--Hb_000170_150 Hb_003768_050 Hb_003768_050 Hb_013399_070--Hb_003768_050 Hb_001946_340 Hb_001946_340 Hb_013399_070--Hb_001946_340 Hb_000069_470 Hb_000069_470 Hb_013399_070--Hb_000069_470 Hb_013399_070--Hb_001821_090 Hb_000579_230 Hb_000579_230 Hb_013399_070--Hb_000579_230 Hb_000003_190 Hb_000003_190 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_004371_010--Hb_000094_320 Hb_000061_490 Hb_000061_490 Hb_004371_010--Hb_000061_490 Hb_000768_180 Hb_000768_180 Hb_004371_010--Hb_000768_180 Hb_144744_010 Hb_144744_010 Hb_004371_010--Hb_144744_010 Hb_004371_010--Hb_000347_120 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_002107_070 Hb_002107_070 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_001821_090--Hb_000579_230 Hb_000025_280 Hb_000025_280 Hb_004483_040--Hb_000025_280 Hb_004483_040--Hb_000069_470 Hb_011242_060 Hb_011242_060 Hb_004483_040--Hb_011242_060 Hb_002085_030 Hb_002085_030 Hb_004483_040--Hb_002085_030 Hb_000661_130 Hb_000661_130 Hb_004483_040--Hb_000661_130 Hb_005539_090 Hb_005539_090 Hb_004483_040--Hb_005539_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.869839 1.89631 0.432203 0.30227 0.567776 1.1074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.551593 0.567563 0.538924 1.24791 0.742028

CAGE analysis