Hb_004109_040

Information

Type -
Description -
Location Contig4109: 31727-33889
Sequence    

Annotation

kegg
ID cit:102630543
description pentatricopeptide repeat-containing protein At1g53600, mitochondrial-like
nr
ID XP_012084621.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
swissprot
ID Q9C8L6
description Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2
trembl
ID A0A067JU02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20191 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40605: 19834-31365 , PASA_asmbl_40615: 31534-31994 , PASA_asmbl_40616: 32354-32862 , PASA_asmbl_40617: 33295-33610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
2 Hb_002411_030 0.0866240112 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
3 Hb_000983_090 0.1008295855 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
4 Hb_000856_190 0.1027070597 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
5 Hb_007813_040 0.109593778 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
6 Hb_029799_010 0.1148677494 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_000010_400 0.1159861428 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
8 Hb_001247_130 0.1160271058 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
9 Hb_000084_030 0.1164148638 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000661_290 0.1164503315 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
11 Hb_000130_380 0.1164713494 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
12 Hb_000853_430 0.1167969417 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
13 Hb_000890_040 0.1170008385 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
14 Hb_000196_070 0.1173822126 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH80-like [Jatropha curcas]
15 Hb_003106_040 0.1176863274 - - lipase, putative [Ricinus communis]
16 Hb_012389_020 0.1180240412 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
17 Hb_000010_240 0.1196083291 - - Protein bem46, putative [Ricinus communis]
18 Hb_003464_050 0.1196840119 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
19 Hb_000818_010 0.1205940336 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
20 Hb_005137_050 0.1225236874 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_040 Hb_004109_040 Hb_002411_030 Hb_002411_030 Hb_004109_040--Hb_002411_030 Hb_000983_090 Hb_000983_090 Hb_004109_040--Hb_000983_090 Hb_000856_190 Hb_000856_190 Hb_004109_040--Hb_000856_190 Hb_007813_040 Hb_007813_040 Hb_004109_040--Hb_007813_040 Hb_029799_010 Hb_029799_010 Hb_004109_040--Hb_029799_010 Hb_000010_400 Hb_000010_400 Hb_004109_040--Hb_000010_400 Hb_002411_030--Hb_000983_090 Hb_005137_050 Hb_005137_050 Hb_002411_030--Hb_005137_050 Hb_005541_010 Hb_005541_010 Hb_002411_030--Hb_005541_010 Hb_001728_050 Hb_001728_050 Hb_002411_030--Hb_001728_050 Hb_000130_240 Hb_000130_240 Hb_002411_030--Hb_000130_240 Hb_005675_040 Hb_005675_040 Hb_002411_030--Hb_005675_040 Hb_000983_090--Hb_000856_190 Hb_012762_030 Hb_012762_030 Hb_000983_090--Hb_012762_030 Hb_004204_170 Hb_004204_170 Hb_000983_090--Hb_004204_170 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670 Hb_000856_190--Hb_004204_170 Hb_000818_010 Hb_000818_010 Hb_000856_190--Hb_000818_010 Hb_000334_220 Hb_000334_220 Hb_000856_190--Hb_000334_220 Hb_000085_100 Hb_000085_100 Hb_000856_190--Hb_000085_100 Hb_000856_190--Hb_012762_030 Hb_007813_040--Hb_000010_400 Hb_003862_050 Hb_003862_050 Hb_007813_040--Hb_003862_050 Hb_002620_010 Hb_002620_010 Hb_007813_040--Hb_002620_010 Hb_000175_460 Hb_000175_460 Hb_007813_040--Hb_000175_460 Hb_000318_190 Hb_000318_190 Hb_007813_040--Hb_000318_190 Hb_000629_010 Hb_000629_010 Hb_007813_040--Hb_000629_010 Hb_000661_290 Hb_000661_290 Hb_029799_010--Hb_000661_290 Hb_029799_010--Hb_000818_010 Hb_029799_010--Hb_000983_090 Hb_029799_010--Hb_004204_170 Hb_029799_010--Hb_000856_190 Hb_000398_010 Hb_000398_010 Hb_029799_010--Hb_000398_010 Hb_011995_010 Hb_011995_010 Hb_000010_400--Hb_011995_010 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000302_270 Hb_000302_270 Hb_000010_400--Hb_000302_270 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000521_320 Hb_000521_320 Hb_000010_400--Hb_000521_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.85113 4.84134 4.25287 1.29635 3.34313 4.32662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52505 3.68054 4.98214 1.60568 1.0348

CAGE analysis