Hb_002849_040

Information

Type -
Description -
Location Contig2849: 29215-33983
Sequence    

Annotation

kegg
ID rcu:RCOM_1616330
description caax prenyl protease ste24, putative (EC:3.4.24.84)
nr
ID XP_002511907.1
description caax prenyl protease ste24, putative [Ricinus communis]
swissprot
ID Q8RX88
description CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1
trembl
ID B9RDW8
description Caax prenyl protease ste24, putative OS=Ricinus communis GN=RCOM_1616330 PE=3 SV=1
Gene Ontology
ID GO:0008233
description caax prenyl protease 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_040 0.0 - - caax prenyl protease ste24, putative [Ricinus communis]
2 Hb_002205_050 0.14021596 - - hypothetical protein JCGZ_03335 [Jatropha curcas]
3 Hb_004060_030 0.162449716 - - PREDICTED: primase homolog protein [Jatropha curcas]
4 Hb_022092_090 0.163288748 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
5 Hb_006502_080 0.1679668696 - - -
6 Hb_005656_050 0.1691509867 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
7 Hb_000413_160 0.172039827 - - PREDICTED: uncharacterized protein LOC105649406 isoform X2 [Jatropha curcas]
8 Hb_007012_020 0.1727192871 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
9 Hb_136731_010 0.1785686036 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
10 Hb_001789_130 0.1831268829 - - short-chain dehydrogenase Tic32 family protein [Populus trichocarpa]
11 Hb_000062_420 0.1877379294 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007763_060 0.1906729321 - - BnaA02g23510D [Brassica napus]
13 Hb_000656_100 0.1910053761 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
14 Hb_005085_030 0.1953784628 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
15 Hb_032927_010 0.1979827205 - - -
16 Hb_114343_010 0.1982035259 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
17 Hb_000380_010 0.1995271313 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
18 Hb_007124_010 0.2001862582 - - unnamed protein product [Coffea canephora]
19 Hb_000329_770 0.2011196006 - - conserved hypothetical protein [Ricinus communis]
20 Hb_106005_010 0.2021182021 - - EG5651 [Manihot esculenta]

Gene co-expression network

sample Hb_002849_040 Hb_002849_040 Hb_002205_050 Hb_002205_050 Hb_002849_040--Hb_002205_050 Hb_004060_030 Hb_004060_030 Hb_002849_040--Hb_004060_030 Hb_022092_090 Hb_022092_090 Hb_002849_040--Hb_022092_090 Hb_006502_080 Hb_006502_080 Hb_002849_040--Hb_006502_080 Hb_005656_050 Hb_005656_050 Hb_002849_040--Hb_005656_050 Hb_000413_160 Hb_000413_160 Hb_002849_040--Hb_000413_160 Hb_009543_020 Hb_009543_020 Hb_002205_050--Hb_009543_020 Hb_002205_050--Hb_004060_030 Hb_032458_010 Hb_032458_010 Hb_002205_050--Hb_032458_010 Hb_000696_350 Hb_000696_350 Hb_002205_050--Hb_000696_350 Hb_006663_070 Hb_006663_070 Hb_002205_050--Hb_006663_070 Hb_026745_020 Hb_026745_020 Hb_004060_030--Hb_026745_020 Hb_005085_030 Hb_005085_030 Hb_004060_030--Hb_005085_030 Hb_028420_020 Hb_028420_020 Hb_004060_030--Hb_028420_020 Hb_002174_050 Hb_002174_050 Hb_004060_030--Hb_002174_050 Hb_005862_010 Hb_005862_010 Hb_004060_030--Hb_005862_010 Hb_000329_560 Hb_000329_560 Hb_004060_030--Hb_000329_560 Hb_000963_190 Hb_000963_190 Hb_022092_090--Hb_000963_190 Hb_011671_220 Hb_011671_220 Hb_022092_090--Hb_011671_220 Hb_001019_060 Hb_001019_060 Hb_022092_090--Hb_001019_060 Hb_029510_140 Hb_029510_140 Hb_022092_090--Hb_029510_140 Hb_000364_150 Hb_000364_150 Hb_022092_090--Hb_000364_150 Hb_005117_010 Hb_005117_010 Hb_022092_090--Hb_005117_010 Hb_032927_010 Hb_032927_010 Hb_006502_080--Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_006502_080--Hb_000812_040 Hb_007012_020 Hb_007012_020 Hb_006502_080--Hb_007012_020 Hb_136731_010 Hb_136731_010 Hb_006502_080--Hb_136731_010 Hb_067776_010 Hb_067776_010 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_000380_010 Hb_000380_010 Hb_005656_050--Hb_000380_010 Hb_005656_050--Hb_007012_020 Hb_007317_060 Hb_007317_060 Hb_005656_050--Hb_007317_060 Hb_005656_050--Hb_022092_090 Hb_005656_050--Hb_005117_010 Hb_005656_050--Hb_000963_190 Hb_075136_010 Hb_075136_010 Hb_000413_160--Hb_075136_010 Hb_000413_160--Hb_005656_050 Hb_000493_010 Hb_000493_010 Hb_000413_160--Hb_000493_010 Hb_000413_160--Hb_006502_080 Hb_000648_030 Hb_000648_030 Hb_000413_160--Hb_000648_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.483605 0.0753874 0.219748 0.446767 0.38772 2.92865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.728843 1.33734 0.608993 0.231383 0.869437

CAGE analysis