Hb_075136_010

Information

Type -
Description -
Location Contig75136: 94-394
Sequence    

Annotation

kegg
ID rcu:RCOM_1370030
description Protein SSU72, putative
nr
ID XP_002515629.1
description Protein SSU72, putative [Ricinus communis]
swissprot
ID Q6PC19
description RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1
trembl
ID B9RPG0
description Protein SSU72, putative OS=Ricinus communis GN=RCOM_1370030 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase ii subunit a c-terminal domain phosphatase ssu72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075136_010 0.0 - - Protein SSU72, putative [Ricinus communis]
2 Hb_000413_160 0.161055478 - - PREDICTED: uncharacterized protein LOC105649406 isoform X2 [Jatropha curcas]
3 Hb_000703_260 0.2183678506 - - N-acetylglucosamine kinase, putative [Ricinus communis]
4 Hb_006502_080 0.2205571353 - - -
5 Hb_002849_040 0.2217717431 - - caax prenyl protease ste24, putative [Ricinus communis]
6 Hb_005731_140 0.2479889646 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
7 Hb_000648_030 0.2483081229 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
8 Hb_007747_190 0.248464572 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000493_010 0.2530773678 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
10 Hb_015609_020 0.2532010275 - - PREDICTED: uncharacterized protein LOC105642775 [Jatropha curcas]
11 Hb_032927_010 0.2532344865 - - -
12 Hb_168343_010 0.2551386322 - - sensory transduction histidine kinase, putative [Ricinus communis]
13 Hb_001260_030 0.2554085041 - - conserved hypothetical protein [Ricinus communis]
14 Hb_075964_010 0.2592307922 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
15 Hb_000329_770 0.2600652901 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002810_030 0.2627628126 - - hypothetical protein VITISV_015705 [Vitis vinifera]
17 Hb_000380_010 0.26465998 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
18 Hb_007763_060 0.2672381509 - - BnaA02g23510D [Brassica napus]
19 Hb_007124_010 0.2674924648 - - unnamed protein product [Coffea canephora]
20 Hb_012627_020 0.2675371384 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_075136_010 Hb_075136_010 Hb_000413_160 Hb_000413_160 Hb_075136_010--Hb_000413_160 Hb_000703_260 Hb_000703_260 Hb_075136_010--Hb_000703_260 Hb_006502_080 Hb_006502_080 Hb_075136_010--Hb_006502_080 Hb_002849_040 Hb_002849_040 Hb_075136_010--Hb_002849_040 Hb_005731_140 Hb_005731_140 Hb_075136_010--Hb_005731_140 Hb_000648_030 Hb_000648_030 Hb_075136_010--Hb_000648_030 Hb_000413_160--Hb_002849_040 Hb_005656_050 Hb_005656_050 Hb_000413_160--Hb_005656_050 Hb_000493_010 Hb_000493_010 Hb_000413_160--Hb_000493_010 Hb_000413_160--Hb_006502_080 Hb_000413_160--Hb_000648_030 Hb_003687_020 Hb_003687_020 Hb_000703_260--Hb_003687_020 Hb_000703_260--Hb_006502_080 Hb_000656_100 Hb_000656_100 Hb_000703_260--Hb_000656_100 Hb_001789_130 Hb_001789_130 Hb_000703_260--Hb_001789_130 Hb_000703_260--Hb_002849_040 Hb_150379_010 Hb_150379_010 Hb_000703_260--Hb_150379_010 Hb_032927_010 Hb_032927_010 Hb_006502_080--Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_006502_080--Hb_000812_040 Hb_007012_020 Hb_007012_020 Hb_006502_080--Hb_007012_020 Hb_136731_010 Hb_136731_010 Hb_006502_080--Hb_136731_010 Hb_067776_010 Hb_067776_010 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_002205_050 Hb_002205_050 Hb_002849_040--Hb_002205_050 Hb_004060_030 Hb_004060_030 Hb_002849_040--Hb_004060_030 Hb_022092_090 Hb_022092_090 Hb_002849_040--Hb_022092_090 Hb_002849_040--Hb_006502_080 Hb_002849_040--Hb_005656_050 Hb_032531_060 Hb_032531_060 Hb_005731_140--Hb_032531_060 Hb_002482_060 Hb_002482_060 Hb_005731_140--Hb_002482_060 Hb_106005_010 Hb_106005_010 Hb_005731_140--Hb_106005_010 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_007317_060 Hb_007317_060 Hb_000648_030--Hb_007317_060 Hb_000648_030--Hb_067776_010 Hb_000380_010 Hb_000380_010 Hb_000648_030--Hb_000380_010 Hb_000648_030--Hb_000493_010 Hb_012675_070 Hb_012675_070 Hb_000648_030--Hb_012675_070 Hb_002259_150 Hb_002259_150 Hb_000648_030--Hb_002259_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.78167 0 6.8531 3.09079 2.58988 64.7492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2112 17.0958 21.5342 11.846 10.81

CAGE analysis