Hb_000413_160

Information

Type -
Description -
Location Contig413: 150913-152277
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03420g
description POPTRDRAFT_660497; (2R)-phospho-3-sulfolactate synthase-related family protein
nr
ID XP_012091431.1
description PREDICTED: uncharacterized protein LOC105649406 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21296 PE=4 SV=1
Gene Ontology
ID GO:0003824
description at4g21320p-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40930: 149403-150957 , PASA_asmbl_40934: 152969-155076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_160 0.0 - - PREDICTED: uncharacterized protein LOC105649406 isoform X2 [Jatropha curcas]
2 Hb_075136_010 0.161055478 - - Protein SSU72, putative [Ricinus communis]
3 Hb_002849_040 0.172039827 - - caax prenyl protease ste24, putative [Ricinus communis]
4 Hb_005656_050 0.1762007716 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
5 Hb_000493_010 0.1797009286 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
6 Hb_006502_080 0.1859705307 - - -
7 Hb_000648_030 0.1874368654 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
8 Hb_000329_770 0.1923534215 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000380_010 0.193952046 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
10 Hb_007763_060 0.1982854682 - - BnaA02g23510D [Brassica napus]
11 Hb_002810_030 0.201444273 - - hypothetical protein VITISV_015705 [Vitis vinifera]
12 Hb_000491_090 0.2016896134 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
13 Hb_004448_020 0.2024961219 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
14 Hb_005731_140 0.2025964809 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
15 Hb_000914_070 0.2057440081 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
16 Hb_074979_020 0.2059837718 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000157_120 0.206337519 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_007317_060 0.2068756674 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
19 Hb_001260_030 0.2079833969 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002482_060 0.2087103374 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000413_160 Hb_000413_160 Hb_075136_010 Hb_075136_010 Hb_000413_160--Hb_075136_010 Hb_002849_040 Hb_002849_040 Hb_000413_160--Hb_002849_040 Hb_005656_050 Hb_005656_050 Hb_000413_160--Hb_005656_050 Hb_000493_010 Hb_000493_010 Hb_000413_160--Hb_000493_010 Hb_006502_080 Hb_006502_080 Hb_000413_160--Hb_006502_080 Hb_000648_030 Hb_000648_030 Hb_000413_160--Hb_000648_030 Hb_000703_260 Hb_000703_260 Hb_075136_010--Hb_000703_260 Hb_075136_010--Hb_006502_080 Hb_075136_010--Hb_002849_040 Hb_005731_140 Hb_005731_140 Hb_075136_010--Hb_005731_140 Hb_075136_010--Hb_000648_030 Hb_002205_050 Hb_002205_050 Hb_002849_040--Hb_002205_050 Hb_004060_030 Hb_004060_030 Hb_002849_040--Hb_004060_030 Hb_022092_090 Hb_022092_090 Hb_002849_040--Hb_022092_090 Hb_002849_040--Hb_006502_080 Hb_002849_040--Hb_005656_050 Hb_000380_010 Hb_000380_010 Hb_005656_050--Hb_000380_010 Hb_007012_020 Hb_007012_020 Hb_005656_050--Hb_007012_020 Hb_007317_060 Hb_007317_060 Hb_005656_050--Hb_007317_060 Hb_005656_050--Hb_022092_090 Hb_005117_010 Hb_005117_010 Hb_005656_050--Hb_005117_010 Hb_000963_190 Hb_000963_190 Hb_005656_050--Hb_000963_190 Hb_000493_010--Hb_000648_030 Hb_042710_010 Hb_042710_010 Hb_000493_010--Hb_042710_010 Hb_001296_030 Hb_001296_030 Hb_000493_010--Hb_001296_030 Hb_000672_120 Hb_000672_120 Hb_000493_010--Hb_000672_120 Hb_000419_130 Hb_000419_130 Hb_000493_010--Hb_000419_130 Hb_000493_010--Hb_007317_060 Hb_032927_010 Hb_032927_010 Hb_006502_080--Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_006502_080--Hb_000812_040 Hb_006502_080--Hb_007012_020 Hb_136731_010 Hb_136731_010 Hb_006502_080--Hb_136731_010 Hb_067776_010 Hb_067776_010 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_000648_030--Hb_007317_060 Hb_000648_030--Hb_067776_010 Hb_000648_030--Hb_000380_010 Hb_012675_070 Hb_012675_070 Hb_000648_030--Hb_012675_070 Hb_002259_150 Hb_002259_150 Hb_000648_030--Hb_002259_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2849 0.519055 1.12842 1.37627 0.834527 14.3602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15783 4.91934 6.33082 0.984509 2.31993

CAGE analysis