Hb_000103_310

Information

Type -
Description -
Location Contig103: 273651-276425
Sequence    

Annotation

kegg
ID rcu:RCOM_0911000
description coated vesicle membrane protein, putative
nr
ID XP_012069712.1
description PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
swissprot
ID Q9LIL4
description Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana GN=At3g22845 PE=2 SV=1
trembl
ID A0A067KVU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02235 PE=3 SV=1
Gene Ontology
ID GO:0005773
description transmembrane emp24 domain-containing protein p24beta3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01223: 273656-276389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_310 0.0 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
2 Hb_033286_010 0.0860988944 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
3 Hb_005946_210 0.0951250583 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
4 Hb_003671_010 0.1009169484 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
5 Hb_002351_030 0.1017899586 - - catalytic, putative [Ricinus communis]
6 Hb_162060_010 0.1023595413 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002248_110 0.1032931817 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
8 Hb_010272_010 0.1035119619 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
9 Hb_007380_140 0.1035597491 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
10 Hb_000696_010 0.1061958659 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
11 Hb_000056_160 0.1081788641 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
12 Hb_058999_030 0.1088047259 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
13 Hb_004466_040 0.1089047924 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
14 Hb_000261_210 0.1098422929 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
15 Hb_001227_130 0.1104240923 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
16 Hb_004659_020 0.1110808135 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
17 Hb_002473_050 0.1120353383 - - catalytic, putative [Ricinus communis]
18 Hb_017295_010 0.1137128239 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
19 Hb_000139_260 0.1151712039 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
20 Hb_000608_350 0.1163827017 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_310 Hb_000103_310 Hb_033286_010 Hb_033286_010 Hb_000103_310--Hb_033286_010 Hb_005946_210 Hb_005946_210 Hb_000103_310--Hb_005946_210 Hb_003671_010 Hb_003671_010 Hb_000103_310--Hb_003671_010 Hb_002351_030 Hb_002351_030 Hb_000103_310--Hb_002351_030 Hb_162060_010 Hb_162060_010 Hb_000103_310--Hb_162060_010 Hb_002248_110 Hb_002248_110 Hb_000103_310--Hb_002248_110 Hb_000146_040 Hb_000146_040 Hb_033286_010--Hb_000146_040 Hb_033286_010--Hb_003671_010 Hb_001009_320 Hb_001009_320 Hb_033286_010--Hb_001009_320 Hb_033286_010--Hb_005946_210 Hb_000522_170 Hb_000522_170 Hb_033286_010--Hb_000522_170 Hb_000006_010 Hb_000006_010 Hb_033286_010--Hb_000006_010 Hb_010272_010 Hb_010272_010 Hb_005946_210--Hb_010272_010 Hb_000664_110 Hb_000664_110 Hb_005946_210--Hb_000664_110 Hb_001109_060 Hb_001109_060 Hb_005946_210--Hb_001109_060 Hb_008226_090 Hb_008226_090 Hb_005946_210--Hb_008226_090 Hb_012215_010 Hb_012215_010 Hb_005946_210--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_005946_210--Hb_002539_110 Hb_003683_020 Hb_003683_020 Hb_003671_010--Hb_003683_020 Hb_000696_010 Hb_000696_010 Hb_003671_010--Hb_000696_010 Hb_002785_050 Hb_002785_050 Hb_003671_010--Hb_002785_050 Hb_000260_330 Hb_000260_330 Hb_003671_010--Hb_000260_330 Hb_001882_050 Hb_001882_050 Hb_003671_010--Hb_001882_050 Hb_000261_210 Hb_000261_210 Hb_002351_030--Hb_000261_210 Hb_001002_060 Hb_001002_060 Hb_002351_030--Hb_001002_060 Hb_000371_090 Hb_000371_090 Hb_002351_030--Hb_000371_090 Hb_001227_130 Hb_001227_130 Hb_002351_030--Hb_001227_130 Hb_003119_090 Hb_003119_090 Hb_002351_030--Hb_003119_090 Hb_001252_090 Hb_001252_090 Hb_002351_030--Hb_001252_090 Hb_000322_070 Hb_000322_070 Hb_162060_010--Hb_000322_070 Hb_146081_010 Hb_146081_010 Hb_162060_010--Hb_146081_010 Hb_000635_040 Hb_000635_040 Hb_162060_010--Hb_000635_040 Hb_000096_120 Hb_000096_120 Hb_162060_010--Hb_000096_120 Hb_162060_010--Hb_008226_090 Hb_000009_400 Hb_000009_400 Hb_162060_010--Hb_000009_400 Hb_058999_030 Hb_058999_030 Hb_002248_110--Hb_058999_030 Hb_000208_260 Hb_000208_260 Hb_002248_110--Hb_000208_260 Hb_001269_230 Hb_001269_230 Hb_002248_110--Hb_001269_230 Hb_017700_010 Hb_017700_010 Hb_002248_110--Hb_017700_010 Hb_001188_060 Hb_001188_060 Hb_002248_110--Hb_001188_060 Hb_004659_020 Hb_004659_020 Hb_002248_110--Hb_004659_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.7095 40.2705 79.532 122.971 108.104 84.1702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2148 36.4887 45.3715 48.5221 44.173

CAGE analysis