Hb_129956_010

Information

Type -
Description -
Location Contig129956: 20745-23159
Sequence    

Annotation

kegg
ID egr:104415763
description serine/threonine-protein kinase SAPK2
nr
ID XP_010025418.1
description PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
swissprot
ID Q75LR7
description Serine/threonine-protein kinase SAPK1 OS=Oryza sativa subsp. japonica GN=SAPK1 PE=1 SV=1
trembl
ID A0A059B8T9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04745 PE=4 SV=1
Gene Ontology
ID GO:0005634
description serine threonine-protein kinase sapk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08862: 20534-21212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129956_010 0.0 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
2 Hb_023827_030 0.0754088442 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
3 Hb_105148_020 0.0762595428 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
4 Hb_049846_010 0.0798438806 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
5 Hb_006620_030 0.0811889108 - - nitrate reductase, putative [Ricinus communis]
6 Hb_000139_040 0.0823257815 - - spermine synthase, putative [Ricinus communis]
7 Hb_000312_100 0.0861377331 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
8 Hb_001519_090 0.0863594103 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
9 Hb_016297_010 0.0891889884 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
10 Hb_001258_130 0.0997560432 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
11 Hb_005276_140 0.099861168 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002044_100 0.1053563022 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
13 Hb_006501_080 0.1080428152 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
14 Hb_023582_010 0.1093795431 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001166_010 0.1097864445 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
16 Hb_019053_040 0.1103828163 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000510_250 0.1106546996 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
18 Hb_001369_590 0.1107481729 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
19 Hb_007007_100 0.1113051087 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
20 Hb_000144_130 0.1149721518 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_129956_010 Hb_129956_010 Hb_023827_030 Hb_023827_030 Hb_129956_010--Hb_023827_030 Hb_105148_020 Hb_105148_020 Hb_129956_010--Hb_105148_020 Hb_049846_010 Hb_049846_010 Hb_129956_010--Hb_049846_010 Hb_006620_030 Hb_006620_030 Hb_129956_010--Hb_006620_030 Hb_000139_040 Hb_000139_040 Hb_129956_010--Hb_000139_040 Hb_000312_100 Hb_000312_100 Hb_129956_010--Hb_000312_100 Hb_000069_440 Hb_000069_440 Hb_023827_030--Hb_000069_440 Hb_016297_010 Hb_016297_010 Hb_023827_030--Hb_016297_010 Hb_000282_020 Hb_000282_020 Hb_023827_030--Hb_000282_020 Hb_019053_040 Hb_019053_040 Hb_023827_030--Hb_019053_040 Hb_023582_010 Hb_023582_010 Hb_023827_030--Hb_023582_010 Hb_023827_030--Hb_105148_020 Hb_105148_020--Hb_019053_040 Hb_105148_020--Hb_006620_030 Hb_001166_010 Hb_001166_010 Hb_105148_020--Hb_001166_010 Hb_105148_020--Hb_023582_010 Hb_001258_130 Hb_001258_130 Hb_105148_020--Hb_001258_130 Hb_000160_190 Hb_000160_190 Hb_049846_010--Hb_000160_190 Hb_049846_010--Hb_000139_040 Hb_001958_040 Hb_001958_040 Hb_049846_010--Hb_001958_040 Hb_004007_050 Hb_004007_050 Hb_049846_010--Hb_004007_050 Hb_023640_020 Hb_023640_020 Hb_049846_010--Hb_023640_020 Hb_006501_080 Hb_006501_080 Hb_006620_030--Hb_006501_080 Hb_001369_590 Hb_001369_590 Hb_006620_030--Hb_001369_590 Hb_004308_030 Hb_004308_030 Hb_006620_030--Hb_004308_030 Hb_002499_050 Hb_002499_050 Hb_006620_030--Hb_002499_050 Hb_000139_040--Hb_001258_130 Hb_000139_040--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_000139_040--Hb_000031_240 Hb_005357_140 Hb_005357_140 Hb_000139_040--Hb_005357_140 Hb_001519_090 Hb_001519_090 Hb_000312_100--Hb_001519_090 Hb_000312_100--Hb_023827_030 Hb_005276_140 Hb_005276_140 Hb_000312_100--Hb_005276_140 Hb_000333_020 Hb_000333_020 Hb_000312_100--Hb_000333_020 Hb_029695_090 Hb_029695_090 Hb_000312_100--Hb_029695_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.453676 7.54728 3.10799 0.0461569 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.87684

CAGE analysis