Hb_000056_090

Information

Type -
Description -
Location Contig56: 140548-144250
Sequence    

Annotation

kegg
ID tcc:TCM_011775
description UDP-galactose transporter 3 isoform 1
nr
ID XP_007046181.1
description UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
swissprot
ID Q9M9S6
description UDP-galactose/UDP-glucose transporter 3 OS=Arabidopsis thaliana GN=UTR3 PE=1 SV=1
trembl
ID A0A061EBJ3
description UDP-galactose transporter 3 isoform 1 OS=Theobroma cacao GN=TCM_011775 PE=4 SV=1
Gene Ontology
ID GO:0030173
description udp-galactose udp-glucose transporter 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48687: 140720-143905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_090 0.0 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
2 Hb_000300_020 0.1234431222 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
3 Hb_000352_220 0.1306758614 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_009020_040 0.1311006841 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
5 Hb_005375_110 0.1362260222 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
6 Hb_001080_070 0.1401290644 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
7 Hb_010288_060 0.1413464627 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
8 Hb_000189_450 0.1431070215 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
9 Hb_016760_010 0.1450664567 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_001677_220 0.1470016199 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
11 Hb_000200_350 0.1501391068 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
12 Hb_007002_010 0.1518477933 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
13 Hb_000521_090 0.1519892317 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
14 Hb_002399_020 0.1528511202 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
15 Hb_000008_350 0.1532106767 - - -
16 Hb_000816_200 0.1539078066 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
17 Hb_000120_860 0.1541661276 - - nucellin, putative [Ricinus communis]
18 Hb_001009_260 0.1548792118 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
19 Hb_004735_020 0.1560432668 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
20 Hb_002232_390 0.157070428 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_090 Hb_000056_090 Hb_000300_020 Hb_000300_020 Hb_000056_090--Hb_000300_020 Hb_000352_220 Hb_000352_220 Hb_000056_090--Hb_000352_220 Hb_009020_040 Hb_009020_040 Hb_000056_090--Hb_009020_040 Hb_005375_110 Hb_005375_110 Hb_000056_090--Hb_005375_110 Hb_001080_070 Hb_001080_070 Hb_000056_090--Hb_001080_070 Hb_010288_060 Hb_010288_060 Hb_000056_090--Hb_010288_060 Hb_009687_020 Hb_009687_020 Hb_000300_020--Hb_009687_020 Hb_000300_020--Hb_000352_220 Hb_126917_010 Hb_126917_010 Hb_000300_020--Hb_126917_010 Hb_000023_210 Hb_000023_210 Hb_000300_020--Hb_000023_210 Hb_003171_030 Hb_003171_030 Hb_000300_020--Hb_003171_030 Hb_000816_200 Hb_000816_200 Hb_000300_020--Hb_000816_200 Hb_000495_080 Hb_000495_080 Hb_000352_220--Hb_000495_080 Hb_007002_010 Hb_007002_010 Hb_000352_220--Hb_007002_010 Hb_003226_190 Hb_003226_190 Hb_000352_220--Hb_003226_190 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150 Hb_001220_050 Hb_001220_050 Hb_009020_040--Hb_001220_050 Hb_000200_350 Hb_000200_350 Hb_009020_040--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_009020_040--Hb_000388_150 Hb_005250_010 Hb_005250_010 Hb_009020_040--Hb_005250_010 Hb_002232_390 Hb_002232_390 Hb_009020_040--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_009020_040--Hb_003475_020 Hb_004735_020 Hb_004735_020 Hb_005375_110--Hb_004735_020 Hb_000120_860 Hb_000120_860 Hb_005375_110--Hb_000120_860 Hb_030959_010 Hb_030959_010 Hb_005375_110--Hb_030959_010 Hb_000521_090 Hb_000521_090 Hb_005375_110--Hb_000521_090 Hb_002681_080 Hb_002681_080 Hb_005375_110--Hb_002681_080 Hb_000189_450 Hb_000189_450 Hb_001080_070--Hb_000189_450 Hb_003142_010 Hb_003142_010 Hb_001080_070--Hb_003142_010 Hb_000345_370 Hb_000345_370 Hb_001080_070--Hb_000345_370 Hb_000648_040 Hb_000648_040 Hb_001080_070--Hb_000648_040 Hb_016461_030 Hb_016461_030 Hb_001080_070--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_001080_070--Hb_001677_220 Hb_004339_030 Hb_004339_030 Hb_010288_060--Hb_004339_030 Hb_008147_080 Hb_008147_080 Hb_010288_060--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_010288_060--Hb_000008_350 Hb_000390_030 Hb_000390_030 Hb_010288_060--Hb_000390_030 Hb_000739_210 Hb_000739_210 Hb_010288_060--Hb_000739_210 Hb_003581_290 Hb_003581_290 Hb_010288_060--Hb_003581_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18358 9.39621 15.9829 41.1728 20.9931 15.3452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7446 12.5436 13.018 16.1555 96.5912

CAGE analysis