Hb_001186_100

Information

Type -
Description -
Location Contig1186: 71703-72547
Sequence    

Annotation

kegg
ID rcu:RCOM_0568660
description hypothetical protein
nr
ID XP_012080586.1
description PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05512: 71515-72418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_100 0.0 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
2 Hb_005976_110 0.0939993291 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
3 Hb_005496_040 0.1001669295 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
4 Hb_000342_040 0.1186740619 - - pollen specific protein sf21, putative [Ricinus communis]
5 Hb_007617_010 0.1210489322 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
6 Hb_004117_090 0.1236972805 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
7 Hb_001544_090 0.1263016131 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_008686_010 0.1280357328 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003666_070 0.1281772619 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
10 Hb_168918_010 0.1283684366 - - pectin acetylesterase, putative [Ricinus communis]
11 Hb_010889_010 0.130992534 - - PREDICTED: myosin-12 [Jatropha curcas]
12 Hb_003750_120 0.1315004743 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
13 Hb_000032_420 0.1315396842 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
14 Hb_000003_750 0.1334945972 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
15 Hb_000321_170 0.1338787819 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
16 Hb_004435_020 0.135656271 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
17 Hb_001080_190 0.1361193521 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
18 Hb_005890_020 0.1363794067 - - putative plant disease resistance family protein [Populus trichocarpa]
19 Hb_000748_120 0.137656106 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
20 Hb_007811_020 0.140003172 - - PREDICTED: expansin-A6 [Jatropha curcas]

Gene co-expression network

sample Hb_001186_100 Hb_001186_100 Hb_005976_110 Hb_005976_110 Hb_001186_100--Hb_005976_110 Hb_005496_040 Hb_005496_040 Hb_001186_100--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_001186_100--Hb_000342_040 Hb_007617_010 Hb_007617_010 Hb_001186_100--Hb_007617_010 Hb_004117_090 Hb_004117_090 Hb_001186_100--Hb_004117_090 Hb_001544_090 Hb_001544_090 Hb_001186_100--Hb_001544_090 Hb_005976_110--Hb_001544_090 Hb_004435_020 Hb_004435_020 Hb_005976_110--Hb_004435_020 Hb_001095_020 Hb_001095_020 Hb_005976_110--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_005976_110--Hb_000878_050 Hb_000680_170 Hb_000680_170 Hb_005976_110--Hb_000680_170 Hb_000032_420 Hb_000032_420 Hb_005976_110--Hb_000032_420 Hb_005496_040--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_005496_040--Hb_000032_420 Hb_005496_040--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750 Hb_002045_210 Hb_002045_210 Hb_000342_040--Hb_002045_210 Hb_000342_040--Hb_004117_090 Hb_000441_130 Hb_000441_130 Hb_000342_040--Hb_000441_130 Hb_000342_040--Hb_000032_420 Hb_000342_040--Hb_001544_090 Hb_001080_190 Hb_001080_190 Hb_007617_010--Hb_001080_190 Hb_007617_010--Hb_001544_090 Hb_001439_080 Hb_001439_080 Hb_007617_010--Hb_001439_080 Hb_001817_210 Hb_001817_210 Hb_007617_010--Hb_001817_210 Hb_051663_010 Hb_051663_010 Hb_007617_010--Hb_051663_010 Hb_007617_010--Hb_005976_110 Hb_004117_090--Hb_001544_090 Hb_004117_090--Hb_005976_110 Hb_000190_170 Hb_000190_170 Hb_004117_090--Hb_000190_170 Hb_004117_090--Hb_000032_420 Hb_001544_090--Hb_001080_190 Hb_001674_010 Hb_001674_010 Hb_001544_090--Hb_001674_010 Hb_001544_090--Hb_001095_020 Hb_001544_090--Hb_000032_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.5088 0.841465 8.66446 9.51315 0 0.225072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.230525 0.193028 0.67446 4.46882

CAGE analysis