Hb_004659_010

Information

Type -
Description -
Location Contig4659: 7341-14401
Sequence    

Annotation

kegg
ID rcu:RCOM_1674940
description guanine nucleotide-binding protein beta, putative (EC:2.3.1.48)
nr
ID KHG11481.1
description Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
swissprot
ID P93398
description Guanine nucleotide-binding protein subunit beta-2 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A0B0NK71
description Guanine nucleotide-binding subunit beta-2 OS=Gossypium arboreum GN=F383_06305 PE=4 SV=1
Gene Ontology
ID GO:0005783
description guanine nucleotide-binding protein subunit beta-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44063: 7380-14588 , PASA_asmbl_44064: 7380-10683 , PASA_asmbl_44065: 7345-10396 , PASA_asmbl_44066: 12357-12867 , PASA_asmbl_44067: 13724-14082 , PASA_asmbl_44068: 8107-8286
cDNA
(Sanger)
(ID:Location)		 041_C24.ab1: 7345-7633 , 042_L01.ab1: 7345-10350 , 045_B12.ab1: 7345-10396

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_010 0.0 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
2 Hb_006452_180 0.0886991988 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
3 Hb_000137_010 0.0909271916 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
4 Hb_001009_120 0.0981980781 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
5 Hb_000086_270 0.0991390382 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
6 Hb_010287_020 0.1006382854 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
7 Hb_000230_460 0.102764979 - - Speckle-type POZ protein, putative [Ricinus communis]
8 Hb_000160_140 0.1034249238 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
9 Hb_001409_060 0.1038080053 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
10 Hb_004225_060 0.1044378228 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
11 Hb_000723_030 0.1068971833 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
12 Hb_000086_430 0.1079034453 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
13 Hb_003687_120 0.110106352 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
14 Hb_033152_090 0.1101659173 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
15 Hb_001766_070 0.1112509199 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001500_120 0.1121983272 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_007416_260 0.1124455356 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
18 Hb_003777_110 0.1130864645 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
19 Hb_000956_040 0.1137513601 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
20 Hb_000089_210 0.1147690238 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_004659_010 Hb_004659_010 Hb_006452_180 Hb_006452_180 Hb_004659_010--Hb_006452_180 Hb_000137_010 Hb_000137_010 Hb_004659_010--Hb_000137_010 Hb_001009_120 Hb_001009_120 Hb_004659_010--Hb_001009_120 Hb_000086_270 Hb_000086_270 Hb_004659_010--Hb_000086_270 Hb_010287_020 Hb_010287_020 Hb_004659_010--Hb_010287_020 Hb_000230_460 Hb_000230_460 Hb_004659_010--Hb_000230_460 Hb_006452_180--Hb_010287_020 Hb_000048_080 Hb_000048_080 Hb_006452_180--Hb_000048_080 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_001245_050 Hb_001245_050 Hb_006452_180--Hb_001245_050 Hb_006452_180--Hb_001009_120 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000956_040 Hb_000956_040 Hb_000137_010--Hb_000956_040 Hb_000137_010--Hb_000230_460 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090 Hb_033152_090 Hb_033152_090 Hb_001009_120--Hb_033152_090 Hb_000640_190 Hb_000640_190 Hb_001009_120--Hb_000640_190 Hb_001009_120--Hb_000956_040 Hb_004319_050 Hb_004319_050 Hb_001009_120--Hb_004319_050 Hb_009178_010 Hb_009178_010 Hb_001009_120--Hb_009178_010 Hb_006120_040 Hb_006120_040 Hb_000086_270--Hb_006120_040 Hb_000327_330 Hb_000327_330 Hb_000086_270--Hb_000327_330 Hb_002249_020 Hb_002249_020 Hb_000086_270--Hb_002249_020 Hb_000663_080 Hb_000663_080 Hb_000086_270--Hb_000663_080 Hb_006438_020 Hb_006438_020 Hb_000086_270--Hb_006438_020 Hb_016448_010 Hb_016448_010 Hb_000086_270--Hb_016448_010 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_178968_060 Hb_178968_060 Hb_000230_460--Hb_178968_060 Hb_002435_100 Hb_002435_100 Hb_000230_460--Hb_002435_100 Hb_000176_020 Hb_000176_020 Hb_000230_460--Hb_000176_020 Hb_007254_020 Hb_007254_020 Hb_000230_460--Hb_007254_020 Hb_000160_140 Hb_000160_140 Hb_000230_460--Hb_000160_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.94837 36.9309 55.4099 24.1923 12.2774 11.9541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.36004 21.3204 13.7856 12.8811 24.511

CAGE analysis