Hb_000061_450

Information

Type -
Description -
Location Contig61: 378456-379239
Sequence    

Annotation

kegg
ID rcu:RCOM_1470590
description hypothetical protein
nr
ID XP_002514701.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLT2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50954: 378253-378518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_450 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004650_110 0.1016708412 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
3 Hb_007163_110 0.1146243682 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
4 Hb_143629_170 0.1164693467 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
5 Hb_004943_020 0.1264745406 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_061256_020 0.131195664 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
7 Hb_005730_060 0.1316980959 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
8 Hb_002809_180 0.132668605 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
9 Hb_001278_120 0.1337141061 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
10 Hb_128986_010 0.1340807057 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006242_050 0.1346916076 - - Osmotin precursor, putative [Ricinus communis]
12 Hb_001006_110 0.1348099179 - - PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
13 Hb_001688_050 0.1351956105 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
14 Hb_005269_060 0.1385988052 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
15 Hb_000343_070 0.1393461073 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
16 Hb_003417_050 0.1395402381 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_003855_060 0.1397354521 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
18 Hb_000017_180 0.139900451 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
19 Hb_005656_120 0.140353505 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
20 Hb_000076_240 0.1407114882 - - Early nodulin 55-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000061_450 Hb_000061_450 Hb_004650_110 Hb_004650_110 Hb_000061_450--Hb_004650_110 Hb_007163_110 Hb_007163_110 Hb_000061_450--Hb_007163_110 Hb_143629_170 Hb_143629_170 Hb_000061_450--Hb_143629_170 Hb_004943_020 Hb_004943_020 Hb_000061_450--Hb_004943_020 Hb_061256_020 Hb_061256_020 Hb_000061_450--Hb_061256_020 Hb_005730_060 Hb_005730_060 Hb_000061_450--Hb_005730_060 Hb_002809_180 Hb_002809_180 Hb_004650_110--Hb_002809_180 Hb_004650_110--Hb_007163_110 Hb_003152_020 Hb_003152_020 Hb_004650_110--Hb_003152_020 Hb_000017_180 Hb_000017_180 Hb_004650_110--Hb_000017_180 Hb_001289_070 Hb_001289_070 Hb_004650_110--Hb_001289_070 Hb_128986_010 Hb_128986_010 Hb_004650_110--Hb_128986_010 Hb_007163_110--Hb_003152_020 Hb_005842_010 Hb_005842_010 Hb_007163_110--Hb_005842_010 Hb_006242_050 Hb_006242_050 Hb_007163_110--Hb_006242_050 Hb_136408_040 Hb_136408_040 Hb_007163_110--Hb_136408_040 Hb_007163_110--Hb_000017_180 Hb_143629_170--Hb_128986_010 Hb_002740_050 Hb_002740_050 Hb_143629_170--Hb_002740_050 Hb_143629_170--Hb_004943_020 Hb_143629_170--Hb_006242_050 Hb_003417_050 Hb_003417_050 Hb_143629_170--Hb_003417_050 Hb_003855_060 Hb_003855_060 Hb_143629_170--Hb_003855_060 Hb_001278_120 Hb_001278_120 Hb_004943_020--Hb_001278_120 Hb_004943_020--Hb_003855_060 Hb_000343_070 Hb_000343_070 Hb_004943_020--Hb_000343_070 Hb_007904_150 Hb_007904_150 Hb_004943_020--Hb_007904_150 Hb_004459_010 Hb_004459_010 Hb_004943_020--Hb_004459_010 Hb_061256_020--Hb_000343_070 Hb_061256_020--Hb_002809_180 Hb_061256_020--Hb_001278_120 Hb_061256_020--Hb_004943_020 Hb_010172_040 Hb_010172_040 Hb_061256_020--Hb_010172_040 Hb_061256_020--Hb_004459_010 Hb_010810_060 Hb_010810_060 Hb_005730_060--Hb_010810_060 Hb_027472_060 Hb_027472_060 Hb_005730_060--Hb_027472_060 Hb_003835_080 Hb_003835_080 Hb_005730_060--Hb_003835_080 Hb_001538_080 Hb_001538_080 Hb_005730_060--Hb_001538_080 Hb_001159_230 Hb_001159_230 Hb_005730_060--Hb_001159_230 Hb_000031_180 Hb_000031_180 Hb_005730_060--Hb_000031_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0458176 0.759189 2.24417 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125163 0 0 0.122177 1.85543

CAGE analysis