Hb_028227_040

Information

Type -
Description -
Location Contig28227: 31929-33215
Sequence    

Annotation

kegg
ID rcu:RCOM_1079930
description hypothetical protein
nr
ID XP_012085898.1
description PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
swissprot
ID Q9N0E7
description Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=3
trembl
ID A0A067JVJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17966 PE=4 SV=1
Gene Ontology
ID GO:0003824
description PREDICTED: uncharacterized protein LOC105645005

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29571: 31835-33387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028227_040 0.0 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
2 Hb_001242_040 0.1047811666 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
3 Hb_000272_030 0.1180426483 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
4 Hb_000659_040 0.1184422963 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
5 Hb_006570_060 0.1207783064 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
6 Hb_003054_070 0.1221224075 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
7 Hb_013394_120 0.1222024032 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
8 Hb_009393_090 0.1241640149 - - acyltransferase, putative [Ricinus communis]
9 Hb_003147_040 0.1262782288 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
10 Hb_000818_090 0.1264110786 - - glutamate receptor 3 plant, putative [Ricinus communis]
11 Hb_003266_090 0.12753497 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
12 Hb_001289_010 0.1276209667 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
13 Hb_001789_120 0.1279847412 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
14 Hb_000429_160 0.1295971577 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
15 Hb_000941_090 0.1334832289 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
16 Hb_000160_250 0.1352949591 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
17 Hb_007221_040 0.1381379841 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
18 Hb_003581_050 0.13817881 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
19 Hb_003125_210 0.1384248128 - - Phospholipase C 4 precursor, putative [Ricinus communis]
20 Hb_001318_100 0.1400505152 - - s-adenosylmethionine synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_028227_040 Hb_028227_040 Hb_001242_040 Hb_001242_040 Hb_028227_040--Hb_001242_040 Hb_000272_030 Hb_000272_030 Hb_028227_040--Hb_000272_030 Hb_000659_040 Hb_000659_040 Hb_028227_040--Hb_000659_040 Hb_006570_060 Hb_006570_060 Hb_028227_040--Hb_006570_060 Hb_003054_070 Hb_003054_070 Hb_028227_040--Hb_003054_070 Hb_013394_120 Hb_013394_120 Hb_028227_040--Hb_013394_120 Hb_005051_010 Hb_005051_010 Hb_001242_040--Hb_005051_010 Hb_005211_210 Hb_005211_210 Hb_001242_040--Hb_005211_210 Hb_008689_010 Hb_008689_010 Hb_001242_040--Hb_008689_010 Hb_000434_060 Hb_000434_060 Hb_001242_040--Hb_000434_060 Hb_010222_060 Hb_010222_060 Hb_001242_040--Hb_010222_060 Hb_000272_030--Hb_006570_060 Hb_000260_410 Hb_000260_410 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000659_040--Hb_000272_030 Hb_001318_100 Hb_001318_100 Hb_000659_040--Hb_001318_100 Hb_000856_200 Hb_000856_200 Hb_000659_040--Hb_000856_200 Hb_007894_070 Hb_007894_070 Hb_000659_040--Hb_007894_070 Hb_006570_060--Hb_000173_270 Hb_006570_060--Hb_000260_410 Hb_001143_120 Hb_001143_120 Hb_006570_060--Hb_001143_120 Hb_004880_050 Hb_004880_050 Hb_006570_060--Hb_004880_050 Hb_006570_060--Hb_000659_040 Hb_010164_030 Hb_010164_030 Hb_003054_070--Hb_010164_030 Hb_001117_050 Hb_001117_050 Hb_003054_070--Hb_001117_050 Hb_000012_350 Hb_000012_350 Hb_003054_070--Hb_000012_350 Hb_008221_200 Hb_008221_200 Hb_003054_070--Hb_008221_200 Hb_001427_100 Hb_001427_100 Hb_003054_070--Hb_001427_100 Hb_147006_010 Hb_147006_010 Hb_003054_070--Hb_147006_010 Hb_001789_120 Hb_001789_120 Hb_013394_120--Hb_001789_120 Hb_013394_120--Hb_010222_060 Hb_132840_170 Hb_132840_170 Hb_013394_120--Hb_132840_170 Hb_000818_090 Hb_000818_090 Hb_013394_120--Hb_000818_090 Hb_009522_020 Hb_009522_020 Hb_013394_120--Hb_009522_020 Hb_014700_030 Hb_014700_030 Hb_013394_120--Hb_014700_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101757 6.73132 9.41047 15.0097 0 0.0220085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.186236 0.183104 0.676967 1.2351 12.4195

CAGE analysis