Hb_005183_030

Information

Type -
Description -
Location Contig5183: 7333-14108
Sequence    

Annotation

kegg
ID csv:101222915
description probable calcium-binding protein CML10-like
nr
ID XP_012071988.1
description PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
swissprot
ID Q9LX27
description Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1
trembl
ID K4BUZ2
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g079080.2 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46584: 9239-9763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_030 0.0 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
2 Hb_002631_110 0.1010578741 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
3 Hb_000347_320 0.1193391492 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_016734_040 0.1235403314 - - abhydrolase domain containing, putative [Ricinus communis]
5 Hb_005018_030 0.12708984 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
6 Hb_002785_010 0.1280783614 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
7 Hb_012691_060 0.1309506869 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
8 Hb_019925_020 0.1437406151 - - electron carrier, putative [Ricinus communis]
9 Hb_007666_010 0.1444759822 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
10 Hb_000856_210 0.1508520796 - - nitrate transporter, putative [Ricinus communis]
11 Hb_001158_250 0.15188332 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005725_160 0.1551219129 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
13 Hb_094437_020 0.1569766693 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_001232_040 0.1577801341 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
15 Hb_003226_230 0.1579107596 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
16 Hb_000369_040 0.158651809 - - Ankyrin repeat family protein, putative [Theobroma cacao]
17 Hb_006351_120 0.1622857426 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
18 Hb_000120_480 0.1643024324 - - -
19 Hb_000207_240 0.1654066418 - - hypothetical protein RCOM_0686540 [Ricinus communis]
20 Hb_125961_010 0.1691763156 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005183_030 Hb_005183_030 Hb_002631_110 Hb_002631_110 Hb_005183_030--Hb_002631_110 Hb_000347_320 Hb_000347_320 Hb_005183_030--Hb_000347_320 Hb_016734_040 Hb_016734_040 Hb_005183_030--Hb_016734_040 Hb_005018_030 Hb_005018_030 Hb_005183_030--Hb_005018_030 Hb_002785_010 Hb_002785_010 Hb_005183_030--Hb_002785_010 Hb_012691_060 Hb_012691_060 Hb_005183_030--Hb_012691_060 Hb_003226_230 Hb_003226_230 Hb_002631_110--Hb_003226_230 Hb_003858_060 Hb_003858_060 Hb_002631_110--Hb_003858_060 Hb_000369_040 Hb_000369_040 Hb_002631_110--Hb_000369_040 Hb_125961_010 Hb_125961_010 Hb_002631_110--Hb_125961_010 Hb_162676_010 Hb_162676_010 Hb_002631_110--Hb_162676_010 Hb_000271_130 Hb_000271_130 Hb_000347_320--Hb_000271_130 Hb_007666_010 Hb_007666_010 Hb_000347_320--Hb_007666_010 Hb_000120_480 Hb_000120_480 Hb_000347_320--Hb_000120_480 Hb_000230_490 Hb_000230_490 Hb_000347_320--Hb_000230_490 Hb_066293_010 Hb_066293_010 Hb_000347_320--Hb_066293_010 Hb_000920_100 Hb_000920_100 Hb_000347_320--Hb_000920_100 Hb_042463_010 Hb_042463_010 Hb_016734_040--Hb_042463_010 Hb_169948_010 Hb_169948_010 Hb_016734_040--Hb_169948_010 Hb_094437_020 Hb_094437_020 Hb_016734_040--Hb_094437_020 Hb_149345_010 Hb_149345_010 Hb_016734_040--Hb_149345_010 Hb_016734_040--Hb_002631_110 Hb_005018_030--Hb_012691_060 Hb_000020_180 Hb_000020_180 Hb_005018_030--Hb_000020_180 Hb_019925_020 Hb_019925_020 Hb_005018_030--Hb_019925_020 Hb_005018_030--Hb_000230_490 Hb_000752_040 Hb_000752_040 Hb_005018_030--Hb_000752_040 Hb_003050_330 Hb_003050_330 Hb_002785_010--Hb_003050_330 Hb_032202_010 Hb_032202_010 Hb_002785_010--Hb_032202_010 Hb_002785_010--Hb_000369_040 Hb_001158_250 Hb_001158_250 Hb_002785_010--Hb_001158_250 Hb_002785_010--Hb_000752_040 Hb_002785_010--Hb_007666_010 Hb_082972_010 Hb_082972_010 Hb_012691_060--Hb_082972_010 Hb_043127_010 Hb_043127_010 Hb_012691_060--Hb_043127_010 Hb_012691_060--Hb_019925_020 Hb_037519_010 Hb_037519_010 Hb_012691_060--Hb_037519_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0790952 4.42926 0.824499 5.63415 0.176916 0.0948102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0724104 0 0 0.715723 11.1386

CAGE analysis