Hb_006816_060

Information

Type -
Description -
Location Contig6816: 41416-42233
Sequence    

Annotation

kegg
ID egr:104415388
description uncharacterized LOC104415388
nr
ID XP_012067554.1
description PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
swissprot
ID Q9UL19
description Retinoic acid receptor responder protein 3 OS=Homo sapiens GN=RARRES3 PE=1 SV=1
trembl
ID A0A067LCI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26802 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53788: 40643-42247
cDNA
(Sanger)
(ID:Location)		 007_J17.ab1: 41232-42247

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_060 0.0 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
2 Hb_000521_060 0.0473527005 - - PREDICTED: protein YLS3-like [Jatropha curcas]
3 Hb_022250_140 0.0577073752 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_001433_230 0.0693205039 - - PREDICTED: kinesin-4-like [Jatropha curcas]
5 Hb_005396_020 0.0719124798 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
6 Hb_006570_170 0.0791749111 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
7 Hb_001634_050 0.0809978512 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
8 Hb_118934_010 0.0823118121 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
9 Hb_006970_180 0.0825165865 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
10 Hb_000816_090 0.0837802906 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
11 Hb_003060_020 0.0842094047 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_025557_090 0.0861207308 - - hypothetical protein glysoja_034865 [Glycine soja]
13 Hb_009158_010 0.0882768039 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
14 Hb_000628_070 0.0918671253 - - -
15 Hb_151436_010 0.0939385052 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
16 Hb_006889_010 0.0980407636 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
17 Hb_001157_120 0.0994017462 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
18 Hb_002073_210 0.1010136047 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001232_170 0.1013610731 - - sulfate transporter, putative [Ricinus communis]
20 Hb_000964_120 0.1017878591 - - DNA-damage-inducible protein f, putative [Ricinus communis]

Gene co-expression network

sample Hb_006816_060 Hb_006816_060 Hb_000521_060 Hb_000521_060 Hb_006816_060--Hb_000521_060 Hb_022250_140 Hb_022250_140 Hb_006816_060--Hb_022250_140 Hb_001433_230 Hb_001433_230 Hb_006816_060--Hb_001433_230 Hb_005396_020 Hb_005396_020 Hb_006816_060--Hb_005396_020 Hb_006570_170 Hb_006570_170 Hb_006816_060--Hb_006570_170 Hb_001634_050 Hb_001634_050 Hb_006816_060--Hb_001634_050 Hb_118934_010 Hb_118934_010 Hb_000521_060--Hb_118934_010 Hb_001712_010 Hb_001712_010 Hb_000521_060--Hb_001712_010 Hb_000521_060--Hb_022250_140 Hb_000521_060--Hb_001433_230 Hb_003598_050 Hb_003598_050 Hb_000521_060--Hb_003598_050 Hb_022250_140--Hb_006570_170 Hb_006970_180 Hb_006970_180 Hb_022250_140--Hb_006970_180 Hb_022250_140--Hb_001634_050 Hb_151436_010 Hb_151436_010 Hb_022250_140--Hb_151436_010 Hb_002073_210 Hb_002073_210 Hb_022250_140--Hb_002073_210 Hb_001433_230--Hb_022250_140 Hb_014834_100 Hb_014834_100 Hb_001433_230--Hb_014834_100 Hb_001433_230--Hb_001634_050 Hb_005357_170 Hb_005357_170 Hb_001433_230--Hb_005357_170 Hb_001433_230--Hb_005396_020 Hb_005396_020--Hb_001634_050 Hb_000816_090 Hb_000816_090 Hb_005396_020--Hb_000816_090 Hb_012180_070 Hb_012180_070 Hb_005396_020--Hb_012180_070 Hb_003060_020 Hb_003060_020 Hb_005396_020--Hb_003060_020 Hb_005396_020--Hb_006570_170 Hb_003528_090 Hb_003528_090 Hb_005396_020--Hb_003528_090 Hb_006570_170--Hb_001634_050 Hb_006570_170--Hb_000816_090 Hb_006249_010 Hb_006249_010 Hb_006570_170--Hb_006249_010 Hb_006570_170--Hb_012180_070 Hb_001634_050--Hb_012180_070 Hb_000107_240 Hb_000107_240 Hb_001634_050--Hb_000107_240 Hb_001634_050--Hb_006249_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.12107 12.6278 182.81 0.173883 0.203027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.31142 0.32632 0.142285 0.669867 17.1567

CAGE analysis