Hb_000521_060

Information

Type -
Description -
Location Contig521: 37103-38055
Sequence    

Annotation

kegg
ID cic:CICLE_v10033694mg
description hypothetical protein
nr
ID XP_012092588.1
description PREDICTED: protein YLS3-like [Jatropha curcas]
swissprot
ID O64864
description Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1
trembl
ID A0A067JK39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05258 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein yls3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_060 0.0 - - PREDICTED: protein YLS3-like [Jatropha curcas]
2 Hb_006816_060 0.0473527005 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
3 Hb_118934_010 0.0562256122 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
4 Hb_001712_010 0.0786070711 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
5 Hb_022250_140 0.0795548482 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
6 Hb_001433_230 0.084370041 - - PREDICTED: kinesin-4-like [Jatropha curcas]
7 Hb_003598_050 0.087279818 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_000628_070 0.087440498 - - -
9 Hb_009158_010 0.0882024605 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
10 Hb_000816_090 0.0883308107 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
11 Hb_005396_020 0.0894548228 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
12 Hb_025557_090 0.0937551588 - - hypothetical protein glysoja_034865 [Glycine soja]
13 Hb_092272_010 0.0941708743 - - -
14 Hb_003060_020 0.0945954636 - - serine carboxypeptidase, putative [Ricinus communis]
15 Hb_000327_350 0.0949758448 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
16 Hb_013399_060 0.0977420875 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
17 Hb_006570_170 0.0996189553 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
18 Hb_000497_030 0.0997779112 - - -
19 Hb_000318_500 0.1001277715 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006573_120 0.1017179155 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_060 Hb_000521_060 Hb_006816_060 Hb_006816_060 Hb_000521_060--Hb_006816_060 Hb_118934_010 Hb_118934_010 Hb_000521_060--Hb_118934_010 Hb_001712_010 Hb_001712_010 Hb_000521_060--Hb_001712_010 Hb_022250_140 Hb_022250_140 Hb_000521_060--Hb_022250_140 Hb_001433_230 Hb_001433_230 Hb_000521_060--Hb_001433_230 Hb_003598_050 Hb_003598_050 Hb_000521_060--Hb_003598_050 Hb_006816_060--Hb_022250_140 Hb_006816_060--Hb_001433_230 Hb_005396_020 Hb_005396_020 Hb_006816_060--Hb_005396_020 Hb_006570_170 Hb_006570_170 Hb_006816_060--Hb_006570_170 Hb_001634_050 Hb_001634_050 Hb_006816_060--Hb_001634_050 Hb_009158_010 Hb_009158_010 Hb_118934_010--Hb_009158_010 Hb_006573_120 Hb_006573_120 Hb_118934_010--Hb_006573_120 Hb_092272_010 Hb_092272_010 Hb_118934_010--Hb_092272_010 Hb_118934_010--Hb_001712_010 Hb_000497_030 Hb_000497_030 Hb_118934_010--Hb_000497_030 Hb_001712_010--Hb_092272_010 Hb_000628_070 Hb_000628_070 Hb_001712_010--Hb_000628_070 Hb_001343_060 Hb_001343_060 Hb_001712_010--Hb_001343_060 Hb_001141_430 Hb_001141_430 Hb_001712_010--Hb_001141_430 Hb_011344_110 Hb_011344_110 Hb_001712_010--Hb_011344_110 Hb_004757_010 Hb_004757_010 Hb_001712_010--Hb_004757_010 Hb_022250_140--Hb_006570_170 Hb_006970_180 Hb_006970_180 Hb_022250_140--Hb_006970_180 Hb_022250_140--Hb_001634_050 Hb_151436_010 Hb_151436_010 Hb_022250_140--Hb_151436_010 Hb_002073_210 Hb_002073_210 Hb_022250_140--Hb_002073_210 Hb_001433_230--Hb_022250_140 Hb_014834_100 Hb_014834_100 Hb_001433_230--Hb_014834_100 Hb_001433_230--Hb_001634_050 Hb_005357_170 Hb_005357_170 Hb_001433_230--Hb_005357_170 Hb_001433_230--Hb_005396_020 Hb_112950_010 Hb_112950_010 Hb_003598_050--Hb_112950_010 Hb_001500_020 Hb_001500_020 Hb_003598_050--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_003598_050--Hb_006351_050 Hb_000497_080 Hb_000497_080 Hb_003598_050--Hb_000497_080 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_180088_010 Hb_180088_010 Hb_003598_050--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.7913 3.11953 43.1328 0.0670707 0.0790017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0825462 0.0648912 0 0.184936 5.38059

CAGE analysis