Hb_049453_010

Information

Type -
Description -
Location Contig49453: 1373-1633
Sequence    

Annotation

kegg
ID rcu:RCOM_1257640
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002531439.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LTC0
description Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1
trembl
ID B9SZM0
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_1257640 PE=4 SV=1
Gene Ontology
ID GO:0004715
description probable receptor-like protein kinase at5g47070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049453_010 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000020_140 0.0918772281 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
3 Hb_000449_070 0.0984708309 - - unnamed protein product [Vitis vinifera]
4 Hb_000173_180 0.1094431957 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
5 Hb_004625_020 0.1195248376 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
6 Hb_000339_060 0.1265357184 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_000188_040 0.1278563682 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
8 Hb_071079_040 0.1286872599 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
9 Hb_002171_050 0.1297695209 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
10 Hb_002014_130 0.1335524352 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000408_060 0.134299261 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
12 Hb_003638_020 0.1355582425 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
13 Hb_006252_070 0.1366518113 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
14 Hb_001158_170 0.1369307167 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002085_060 0.1372874905 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001454_350 0.1376520602 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
17 Hb_000497_030 0.1383280742 - - -
18 Hb_006386_010 0.1392514293 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
19 Hb_002499_030 0.140112045 - - receptor-kinase, putative [Ricinus communis]
20 Hb_064047_020 0.1419326648 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]

Gene co-expression network

sample Hb_049453_010 Hb_049453_010 Hb_000020_140 Hb_000020_140 Hb_049453_010--Hb_000020_140 Hb_000449_070 Hb_000449_070 Hb_049453_010--Hb_000449_070 Hb_000173_180 Hb_000173_180 Hb_049453_010--Hb_000173_180 Hb_004625_020 Hb_004625_020 Hb_049453_010--Hb_004625_020 Hb_000339_060 Hb_000339_060 Hb_049453_010--Hb_000339_060 Hb_000188_040 Hb_000188_040 Hb_049453_010--Hb_000188_040 Hb_000020_140--Hb_000449_070 Hb_006252_070 Hb_006252_070 Hb_000020_140--Hb_006252_070 Hb_006386_010 Hb_006386_010 Hb_000020_140--Hb_006386_010 Hb_002171_050 Hb_002171_050 Hb_000020_140--Hb_002171_050 Hb_000020_140--Hb_004625_020 Hb_000449_070--Hb_002171_050 Hb_004020_030 Hb_004020_030 Hb_000449_070--Hb_004020_030 Hb_002997_150 Hb_002997_150 Hb_000449_070--Hb_002997_150 Hb_071079_040 Hb_071079_040 Hb_000449_070--Hb_071079_040 Hb_011224_070 Hb_011224_070 Hb_000449_070--Hb_011224_070 Hb_005588_050 Hb_005588_050 Hb_000173_180--Hb_005588_050 Hb_001722_110 Hb_001722_110 Hb_000173_180--Hb_001722_110 Hb_000173_180--Hb_000339_060 Hb_003638_020 Hb_003638_020 Hb_000173_180--Hb_003638_020 Hb_000580_210 Hb_000580_210 Hb_000173_180--Hb_000580_210 Hb_004625_020--Hb_002171_050 Hb_133492_010 Hb_133492_010 Hb_004625_020--Hb_133492_010 Hb_180980_010 Hb_180980_010 Hb_004625_020--Hb_180980_010 Hb_005183_070 Hb_005183_070 Hb_004625_020--Hb_005183_070 Hb_142056_010 Hb_142056_010 Hb_004625_020--Hb_142056_010 Hb_000137_050 Hb_000137_050 Hb_004625_020--Hb_000137_050 Hb_000339_060--Hb_003638_020 Hb_002085_060 Hb_002085_060 Hb_000339_060--Hb_002085_060 Hb_070771_010 Hb_070771_010 Hb_000339_060--Hb_070771_010 Hb_002499_030 Hb_002499_030 Hb_000339_060--Hb_002499_030 Hb_000339_060--Hb_071079_040 Hb_000684_190 Hb_000684_190 Hb_000339_060--Hb_000684_190 Hb_002031_020 Hb_002031_020 Hb_000188_040--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000188_040--Hb_180518_010 Hb_001454_350 Hb_001454_350 Hb_000188_040--Hb_001454_350 Hb_005291_020 Hb_005291_020 Hb_000188_040--Hb_005291_020 Hb_000462_120 Hb_000462_120 Hb_000188_040--Hb_000462_120 Hb_000188_040--Hb_006252_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.723058 0.885352 12.5724 0.457404 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.406442 3.66793

CAGE analysis