Hb_017914_020

Information

Type -
Description -
Location Contig17914: 13900-14536
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17325: 3839-13113 , PASA_asmbl_17326: 11272-13113 , PASA_asmbl_17327: 13885-14724
cDNA
(Sanger)
(ID:Location)		 021_C20.ab1: 13885-14640 , 035_L19.ab1: 13885-14640

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017914_020 0.0 - - -
2 Hb_031330_010 0.0939000557 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
3 Hb_000521_060 0.1058633728 - - PREDICTED: protein YLS3-like [Jatropha curcas]
4 Hb_000362_030 0.1082387078 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_071079_040 0.1100198717 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
6 Hb_000645_230 0.1112401733 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
7 Hb_000645_080 0.1113913497 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_000193_130 0.1173849486 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_012787_020 0.120119108 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
10 Hb_118934_010 0.1209742577 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
11 Hb_002785_020 0.1233844835 - - PREDICTED: laccase-4-like [Jatropha curcas]
12 Hb_004586_440 0.1238106322 - - Blue copper protein precursor, putative [Ricinus communis]
13 Hb_000327_350 0.1240162301 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
14 Hb_004657_070 0.1248728885 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
15 Hb_000684_190 0.1267038079 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
16 Hb_000483_340 0.1275604432 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001712_010 0.1283463097 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
18 Hb_004884_040 0.1290999495 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
19 Hb_001722_110 0.1294375297 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
20 Hb_000497_030 0.1295980334 - - -

Gene co-expression network

sample Hb_017914_020 Hb_017914_020 Hb_031330_010 Hb_031330_010 Hb_017914_020--Hb_031330_010 Hb_000521_060 Hb_000521_060 Hb_017914_020--Hb_000521_060 Hb_000362_030 Hb_000362_030 Hb_017914_020--Hb_000362_030 Hb_071079_040 Hb_071079_040 Hb_017914_020--Hb_071079_040 Hb_000645_230 Hb_000645_230 Hb_017914_020--Hb_000645_230 Hb_000645_080 Hb_000645_080 Hb_017914_020--Hb_000645_080 Hb_031330_010--Hb_000645_230 Hb_000483_340 Hb_000483_340 Hb_031330_010--Hb_000483_340 Hb_004884_040 Hb_004884_040 Hb_031330_010--Hb_004884_040 Hb_000684_190 Hb_000684_190 Hb_031330_010--Hb_000684_190 Hb_031330_010--Hb_071079_040 Hb_001856_250 Hb_001856_250 Hb_031330_010--Hb_001856_250 Hb_006816_060 Hb_006816_060 Hb_000521_060--Hb_006816_060 Hb_118934_010 Hb_118934_010 Hb_000521_060--Hb_118934_010 Hb_001712_010 Hb_001712_010 Hb_000521_060--Hb_001712_010 Hb_022250_140 Hb_022250_140 Hb_000521_060--Hb_022250_140 Hb_001433_230 Hb_001433_230 Hb_000521_060--Hb_001433_230 Hb_003598_050 Hb_003598_050 Hb_000521_060--Hb_003598_050 Hb_004586_440 Hb_004586_440 Hb_000362_030--Hb_004586_440 Hb_000362_030--Hb_031330_010 Hb_001369_480 Hb_001369_480 Hb_000362_030--Hb_001369_480 Hb_000608_090 Hb_000608_090 Hb_000362_030--Hb_000608_090 Hb_000362_030--Hb_000645_230 Hb_000482_080 Hb_000482_080 Hb_000362_030--Hb_000482_080 Hb_000497_030 Hb_000497_030 Hb_071079_040--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_071079_040--Hb_000699_220 Hb_000339_060 Hb_000339_060 Hb_071079_040--Hb_000339_060 Hb_071079_040--Hb_000645_230 Hb_006717_060 Hb_006717_060 Hb_071079_040--Hb_006717_060 Hb_000645_230--Hb_000684_190 Hb_002785_020 Hb_002785_020 Hb_000645_230--Hb_002785_020 Hb_000645_230--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000645_230--Hb_002734_020 Hb_000645_230--Hb_000483_340 Hb_012787_020 Hb_012787_020 Hb_000645_080--Hb_012787_020 Hb_000645_080--Hb_000362_030 Hb_000645_080--Hb_000521_060 Hb_028514_010 Hb_028514_010 Hb_000645_080--Hb_028514_010 Hb_000991_060 Hb_000991_060 Hb_000645_080--Hb_000991_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.73214 1.90221 39.4071 0.2138 0.100676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.519624 0.408367 0 0.0904634 7.84934

CAGE analysis