Hb_002391_030

Information

Type -
Description -
Location Contig2391: 27633-33647
Sequence    

Annotation

kegg
ID cic:CICLE_v10026057mg
description hypothetical protein
nr
ID KDO71433.1
description hypothetical protein CISIN_1g020187mg [Citrus sinensis]
swissprot
ID Q9FRV1
description Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1
trembl
ID A0A067FVP8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020187mg PE=4 SV=1
Gene Ontology
ID GO:0004568
description basic endochitinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25048: 31984-33650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_030 0.0 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
2 Hb_005535_070 0.0599995643 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002835_310 0.0638405086 - - ATP binding protein, putative [Ricinus communis]
4 Hb_007545_070 0.078571539 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
5 Hb_000424_130 0.0886467999 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
6 Hb_001516_010 0.0888354416 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
7 Hb_174899_010 0.0914102962 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
8 Hb_000239_050 0.0914775567 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
9 Hb_005018_010 0.0917057985 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_127263_010 0.0941887239 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
11 Hb_174168_010 0.0979545606 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_001079_060 0.0982066427 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
13 Hb_003938_230 0.0988821361 - - Potassium transporter, putative [Ricinus communis]
14 Hb_003101_020 0.0994642394 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
15 Hb_002822_010 0.1000079484 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
16 Hb_012655_010 0.1009308685 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
17 Hb_000300_110 0.102566371 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
18 Hb_005731_010 0.1035157781 - - hypothetical protein VITISV_030941 [Vitis vinifera]
19 Hb_005892_050 0.1040776515 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
20 Hb_000152_350 0.1057768068 - - PREDICTED: enolase [Jatropha curcas]

Gene co-expression network

sample Hb_002391_030 Hb_002391_030 Hb_005535_070 Hb_005535_070 Hb_002391_030--Hb_005535_070 Hb_002835_310 Hb_002835_310 Hb_002391_030--Hb_002835_310 Hb_007545_070 Hb_007545_070 Hb_002391_030--Hb_007545_070 Hb_000424_130 Hb_000424_130 Hb_002391_030--Hb_000424_130 Hb_001516_010 Hb_001516_010 Hb_002391_030--Hb_001516_010 Hb_174899_010 Hb_174899_010 Hb_002391_030--Hb_174899_010 Hb_005535_070--Hb_002835_310 Hb_005535_070--Hb_007545_070 Hb_000239_050 Hb_000239_050 Hb_005535_070--Hb_000239_050 Hb_002822_010 Hb_002822_010 Hb_005535_070--Hb_002822_010 Hb_000300_110 Hb_000300_110 Hb_005535_070--Hb_000300_110 Hb_000156_110 Hb_000156_110 Hb_002835_310--Hb_000156_110 Hb_002835_310--Hb_000424_130 Hb_002835_310--Hb_001516_010 Hb_002835_310--Hb_007545_070 Hb_003938_230 Hb_003938_230 Hb_002835_310--Hb_003938_230 Hb_006618_110 Hb_006618_110 Hb_007545_070--Hb_006618_110 Hb_007545_070--Hb_000300_110 Hb_005892_050 Hb_005892_050 Hb_007545_070--Hb_005892_050 Hb_007545_070--Hb_000239_050 Hb_007545_070--Hb_000424_130 Hb_000152_350 Hb_000152_350 Hb_000424_130--Hb_000152_350 Hb_000424_130--Hb_000300_110 Hb_029920_010 Hb_029920_010 Hb_000424_130--Hb_029920_010 Hb_127263_010 Hb_127263_010 Hb_000424_130--Hb_127263_010 Hb_001079_060 Hb_001079_060 Hb_001516_010--Hb_001079_060 Hb_051663_010 Hb_051663_010 Hb_001516_010--Hb_051663_010 Hb_111985_100 Hb_111985_100 Hb_001516_010--Hb_111985_100 Hb_001516_010--Hb_003938_230 Hb_001514_030 Hb_001514_030 Hb_001516_010--Hb_001514_030 Hb_174899_010--Hb_007545_070 Hb_021443_060 Hb_021443_060 Hb_174899_010--Hb_021443_060 Hb_006267_040 Hb_006267_040 Hb_174899_010--Hb_006267_040 Hb_003101_020 Hb_003101_020 Hb_174899_010--Hb_003101_020 Hb_000722_030 Hb_000722_030 Hb_174899_010--Hb_000722_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0662383 1.64704 0.964836 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.232806 1.23396

CAGE analysis