Hb_000317_230

Information

Type -
Description -
Location Contig317: 169496-181719
Sequence    

Annotation

kegg
ID tcc:TCM_007894
description Major facilitator superfamily protein isoform 1
nr
ID XP_012088369.1
description PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
swissprot
ID Q9M0Y3
description Equilibrative nucleotide transporter 3 OS=Arabidopsis thaliana GN=ENT3 PE=1 SV=1
trembl
ID A0A067JJT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25863 PE=4 SV=1
Gene Ontology
ID GO:0016021
description equilibrative nucleotide transporter 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33380: 174681-175260 , PASA_asmbl_33381: 176494-177012 , PASA_asmbl_33382: 177540-177807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_230 0.0 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
2 Hb_003788_010 0.1219003469 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
3 Hb_000317_220 0.129586827 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002028_160 0.1336587558 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
5 Hb_001856_160 0.1402493072 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000022_280 0.1419658529 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
7 Hb_003376_300 0.1440004507 - - Aquaporin PIP2.2, putative [Ricinus communis]
8 Hb_010174_190 0.14534573 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
9 Hb_010174_170 0.1458483516 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
10 Hb_000236_050 0.145849156 - - phosphate transporter [Manihot esculenta]
11 Hb_000009_130 0.1494445894 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
12 Hb_000300_170 0.1505552314 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
13 Hb_003453_030 0.1525166852 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
14 Hb_004129_110 0.1549329135 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
15 Hb_002307_010 0.1556748979 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
16 Hb_001898_060 0.1580866519 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005489_120 0.1591783833 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
18 Hb_001421_010 0.1593155966 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
19 Hb_000407_080 0.1609546406 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
20 Hb_130967_010 0.1628074504 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000317_230 Hb_000317_230 Hb_003788_010 Hb_003788_010 Hb_000317_230--Hb_003788_010 Hb_000317_220 Hb_000317_220 Hb_000317_230--Hb_000317_220 Hb_002028_160 Hb_002028_160 Hb_000317_230--Hb_002028_160 Hb_001856_160 Hb_001856_160 Hb_000317_230--Hb_001856_160 Hb_000022_280 Hb_000022_280 Hb_000317_230--Hb_000022_280 Hb_003376_300 Hb_003376_300 Hb_000317_230--Hb_003376_300 Hb_000934_290 Hb_000934_290 Hb_003788_010--Hb_000934_290 Hb_130967_010 Hb_130967_010 Hb_003788_010--Hb_130967_010 Hb_039496_010 Hb_039496_010 Hb_003788_010--Hb_039496_010 Hb_000335_050 Hb_000335_050 Hb_003788_010--Hb_000335_050 Hb_009581_050 Hb_009581_050 Hb_003788_010--Hb_009581_050 Hb_012807_060 Hb_012807_060 Hb_003788_010--Hb_012807_060 Hb_000236_050 Hb_000236_050 Hb_000317_220--Hb_000236_050 Hb_175758_010 Hb_175758_010 Hb_000317_220--Hb_175758_010 Hb_001329_110 Hb_001329_110 Hb_000317_220--Hb_001329_110 Hb_005237_040 Hb_005237_040 Hb_000317_220--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_000317_220--Hb_009785_010 Hb_000011_120 Hb_000011_120 Hb_000317_220--Hb_000011_120 Hb_002028_160--Hb_003376_300 Hb_000069_520 Hb_000069_520 Hb_002028_160--Hb_000069_520 Hb_011129_020 Hb_011129_020 Hb_002028_160--Hb_011129_020 Hb_000454_200 Hb_000454_200 Hb_002028_160--Hb_000454_200 Hb_000832_280 Hb_000832_280 Hb_002028_160--Hb_000832_280 Hb_001799_090 Hb_001799_090 Hb_001856_160--Hb_001799_090 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_001856_160--Hb_003376_300 Hb_002289_110 Hb_002289_110 Hb_001856_160--Hb_002289_110 Hb_005489_120 Hb_005489_120 Hb_001856_160--Hb_005489_120 Hb_001856_160--Hb_000454_200 Hb_004129_110 Hb_004129_110 Hb_000022_280--Hb_004129_110 Hb_000300_170 Hb_000300_170 Hb_000022_280--Hb_000300_170 Hb_010174_170 Hb_010174_170 Hb_000022_280--Hb_010174_170 Hb_166009_010 Hb_166009_010 Hb_000022_280--Hb_166009_010 Hb_000009_130 Hb_000009_130 Hb_000022_280--Hb_000009_130 Hb_000022_280--Hb_005489_120 Hb_003376_300--Hb_000454_200 Hb_005087_030 Hb_005087_030 Hb_003376_300--Hb_005087_030 Hb_002450_180 Hb_002450_180 Hb_003376_300--Hb_002450_180 Hb_003376_300--Hb_166009_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0204049 1.2032 0.58285 1.29459 0.00852925 0.0420045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124183 0.0162856 0 2.10422 0.275946

CAGE analysis