Hb_003176_020

Information

Type -
Description -
Location Contig3176: 24753-31192
Sequence    

Annotation

kegg
ID vvi:100248545
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1
nr
ID XP_002283186.2
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9T289
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0191610 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003176_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
2 Hb_000286_180 0.1099913589 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
3 Hb_009786_010 0.1136930321 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_003376_150 0.1345177901 - - PREDICTED: peroxidase 21 [Jatropha curcas]
5 Hb_005048_080 0.1429217413 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
6 Hb_000072_160 0.1575148882 - - proline oxidase [Manihot esculenta]
7 Hb_000465_380 0.1638077391 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_006615_190 0.1682044602 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
9 Hb_002890_060 0.169467765 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
10 Hb_006052_040 0.1711601531 - - pyruvate decarboxylase [Hevea brasiliensis]
11 Hb_081686_030 0.1717728373 - - hypothetical protein MIMGU_mgv11b016770mg [Erythranthe guttata]
12 Hb_008195_020 0.1720066763 - - Vacuolar-processing enzyme precursor [Ricinus communis]
13 Hb_000029_180 0.1725558096 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
14 Hb_000625_040 0.1750520773 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
15 Hb_002239_020 0.1755411746 - - MLO, putative [Theobroma cacao]
16 Hb_000172_010 0.1767336237 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
17 Hb_000146_110 0.1779662899 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
18 Hb_011470_010 0.1828742428 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
19 Hb_166155_010 0.1831520645 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
20 Hb_030370_070 0.1838953703 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003176_020 Hb_003176_020 Hb_000286_180 Hb_000286_180 Hb_003176_020--Hb_000286_180 Hb_009786_010 Hb_009786_010 Hb_003176_020--Hb_009786_010 Hb_003376_150 Hb_003376_150 Hb_003176_020--Hb_003376_150 Hb_005048_080 Hb_005048_080 Hb_003176_020--Hb_005048_080 Hb_000072_160 Hb_000072_160 Hb_003176_020--Hb_000072_160 Hb_000465_380 Hb_000465_380 Hb_003176_020--Hb_000465_380 Hb_000286_180--Hb_005048_080 Hb_000392_510 Hb_000392_510 Hb_000286_180--Hb_000392_510 Hb_000029_180 Hb_000029_180 Hb_000286_180--Hb_000029_180 Hb_000286_180--Hb_003376_150 Hb_002218_060 Hb_002218_060 Hb_000286_180--Hb_002218_060 Hb_009786_010--Hb_000072_160 Hb_014361_130 Hb_014361_130 Hb_009786_010--Hb_014361_130 Hb_009786_010--Hb_003376_150 Hb_002968_010 Hb_002968_010 Hb_009786_010--Hb_002968_010 Hb_081686_030 Hb_081686_030 Hb_009786_010--Hb_081686_030 Hb_006052_040 Hb_006052_040 Hb_003376_150--Hb_006052_040 Hb_000398_200 Hb_000398_200 Hb_003376_150--Hb_000398_200 Hb_000625_040 Hb_000625_040 Hb_003376_150--Hb_000625_040 Hb_166155_010 Hb_166155_010 Hb_003376_150--Hb_166155_010 Hb_003376_150--Hb_005048_080 Hb_005048_080--Hb_166155_010 Hb_005048_080--Hb_000029_180 Hb_030370_070 Hb_030370_070 Hb_005048_080--Hb_030370_070 Hb_002272_070 Hb_002272_070 Hb_000072_160--Hb_002272_070 Hb_002329_030 Hb_002329_030 Hb_000072_160--Hb_002329_030 Hb_006615_190 Hb_006615_190 Hb_000072_160--Hb_006615_190 Hb_145139_010 Hb_145139_010 Hb_000072_160--Hb_145139_010 Hb_000072_160--Hb_002968_010 Hb_000072_160--Hb_014361_130 Hb_000465_380--Hb_000029_180 Hb_108055_010 Hb_108055_010 Hb_000465_380--Hb_108055_010 Hb_010921_060 Hb_010921_060 Hb_000465_380--Hb_010921_060 Hb_000465_380--Hb_030370_070 Hb_129399_010 Hb_129399_010 Hb_000465_380--Hb_129399_010 Hb_002239_020 Hb_002239_020 Hb_000465_380--Hb_002239_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.50461 0.00937806 0.304977 0.0061788 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.305756 0.376249

CAGE analysis