Hb_004880_100

Information

Type -
Description -
Location Contig4880: 156786-161119
Sequence    

Annotation

kegg
ID gmx:100811148
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like
nr
ID XP_003526119.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
swissprot
ID Q9LW83
description G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana GN=CES101 PE=2 SV=2
trembl
ID I1KE60
description Serine/threonine-protein kinase OS=Glycine max PE=3 SV=2
Gene Ontology
ID GO:0005488
description receptor-like serine threonine-protein kinase sd1-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45098: 159706-160051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004880_100 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
2 Hb_000177_130 0.074164748 - - wall-associated kinase, putative [Ricinus communis]
3 Hb_013720_010 0.116482178 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
4 Hb_000331_710 0.1209594179 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_002010_020 0.122971678 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
6 Hb_000002_100 0.125343897 - - phosphate transporter [Manihot esculenta]
7 Hb_000705_130 0.1256788403 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000027_060 0.1264156469 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
9 Hb_002890_320 0.1270655065 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
10 Hb_007416_170 0.1286333076 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
11 Hb_003914_050 0.1340476277 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
12 Hb_004899_360 0.1364568053 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_003077_060 0.1375819289 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
14 Hb_000247_150 0.1414605199 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
15 Hb_000347_380 0.1414679982 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_107552_020 0.1451624935 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
17 Hb_154466_010 0.1529996775 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
18 Hb_006698_020 0.1531930455 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
19 Hb_003811_030 0.1533137961 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
20 Hb_008667_030 0.1535600977 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_004880_100 Hb_004880_100 Hb_000177_130 Hb_000177_130 Hb_004880_100--Hb_000177_130 Hb_013720_010 Hb_013720_010 Hb_004880_100--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_004880_100--Hb_000331_710 Hb_002010_020 Hb_002010_020 Hb_004880_100--Hb_002010_020 Hb_000002_100 Hb_000002_100 Hb_004880_100--Hb_000002_100 Hb_000705_130 Hb_000705_130 Hb_004880_100--Hb_000705_130 Hb_000177_130--Hb_000002_100 Hb_003077_060 Hb_003077_060 Hb_000177_130--Hb_003077_060 Hb_000412_090 Hb_000412_090 Hb_000177_130--Hb_000412_090 Hb_000177_130--Hb_000705_130 Hb_002890_320 Hb_002890_320 Hb_000177_130--Hb_002890_320 Hb_013720_010--Hb_000331_710 Hb_006698_020 Hb_006698_020 Hb_013720_010--Hb_006698_020 Hb_000247_150 Hb_000247_150 Hb_013720_010--Hb_000247_150 Hb_000027_060 Hb_000027_060 Hb_013720_010--Hb_000027_060 Hb_001104_270 Hb_001104_270 Hb_013720_010--Hb_001104_270 Hb_008667_030 Hb_008667_030 Hb_013720_010--Hb_008667_030 Hb_000331_710--Hb_000027_060 Hb_000331_710--Hb_000247_150 Hb_000331_710--Hb_000705_130 Hb_004712_140 Hb_004712_140 Hb_000331_710--Hb_004712_140 Hb_000331_710--Hb_006698_020 Hb_154466_010 Hb_154466_010 Hb_002010_020--Hb_154466_010 Hb_008202_020 Hb_008202_020 Hb_002010_020--Hb_008202_020 Hb_002471_190 Hb_002471_190 Hb_002010_020--Hb_002471_190 Hb_002391_020 Hb_002391_020 Hb_002010_020--Hb_002391_020 Hb_004899_360 Hb_004899_360 Hb_002010_020--Hb_004899_360 Hb_001619_140 Hb_001619_140 Hb_002010_020--Hb_001619_140 Hb_002085_070 Hb_002085_070 Hb_000002_100--Hb_002085_070 Hb_000521_290 Hb_000521_290 Hb_000002_100--Hb_000521_290 Hb_012018_020 Hb_012018_020 Hb_000002_100--Hb_012018_020 Hb_001514_100 Hb_001514_100 Hb_000002_100--Hb_001514_100 Hb_010921_060 Hb_010921_060 Hb_000002_100--Hb_010921_060 Hb_015882_020 Hb_015882_020 Hb_000705_130--Hb_015882_020 Hb_000705_130--Hb_000027_060 Hb_008040_060 Hb_008040_060 Hb_000705_130--Hb_008040_060 Hb_001534_150 Hb_001534_150 Hb_000705_130--Hb_001534_150 Hb_000522_130 Hb_000522_130 Hb_000705_130--Hb_000522_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.15553 0.495351 0.142501 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.183463 0.231212

CAGE analysis