Hb_006185_010

Information

Type -
Description -
Location Contig6185: 2252-3289
Sequence    

Annotation

kegg
ID rcu:RCOM_0654330
description Mitochondrial carrier protein RIM2, putative
nr
ID XP_010087691.1
description hypothetical protein L484_013453 [Morus notabilis]
swissprot
ID Q54VX4
description Mitochondrial substrate carrier family protein J OS=Dictyostelium discoideum GN=mcfJ PE=2 SV=1
trembl
ID W9QNN2
description Uncharacterized protein OS=Morus notabilis GN=L484_013453 PE=3 SV=1
Gene Ontology
ID GO:0005743
description solute carrier family 25 member 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51321: 2174-2466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006185_010 0.0 - - hypothetical protein L484_013453 [Morus notabilis]
2 Hb_000342_140 0.1507900319 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
3 Hb_001818_060 0.1539857458 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
4 Hb_000836_600 0.1560512463 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
5 Hb_001133_010 0.1611054537 - - conserved hypothetical protein [Ricinus communis]
6 Hb_138585_100 0.1733032253 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
7 Hb_103788_010 0.1737185896 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_000732_080 0.1817548266 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
9 Hb_000331_280 0.1822656977 - - AMP dependent CoA ligase, putative [Ricinus communis]
10 Hb_063716_090 0.1829861374 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000797_060 0.1845307132 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_000270_770 0.1849002427 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
13 Hb_003082_040 0.1857739002 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
14 Hb_000025_400 0.1893947077 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
15 Hb_000200_170 0.1925933821 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
16 Hb_020967_010 0.1932659586 - - -
17 Hb_017159_010 0.1944729521 - - -
18 Hb_008468_030 0.1952991998 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_003637_020 0.1958239938 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000336_190 0.1968474045 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]

Gene co-expression network

sample Hb_006185_010 Hb_006185_010 Hb_000342_140 Hb_000342_140 Hb_006185_010--Hb_000342_140 Hb_001818_060 Hb_001818_060 Hb_006185_010--Hb_001818_060 Hb_000836_600 Hb_000836_600 Hb_006185_010--Hb_000836_600 Hb_001133_010 Hb_001133_010 Hb_006185_010--Hb_001133_010 Hb_138585_100 Hb_138585_100 Hb_006185_010--Hb_138585_100 Hb_103788_010 Hb_103788_010 Hb_006185_010--Hb_103788_010 Hb_003637_020 Hb_003637_020 Hb_000342_140--Hb_003637_020 Hb_154538_010 Hb_154538_010 Hb_000342_140--Hb_154538_010 Hb_017159_010 Hb_017159_010 Hb_000342_140--Hb_017159_010 Hb_003082_040 Hb_003082_040 Hb_000342_140--Hb_003082_040 Hb_001278_040 Hb_001278_040 Hb_000342_140--Hb_001278_040 Hb_000200_170 Hb_000200_170 Hb_001818_060--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_001818_060--Hb_002849_070 Hb_000465_260 Hb_000465_260 Hb_001818_060--Hb_000465_260 Hb_004631_110 Hb_004631_110 Hb_001818_060--Hb_004631_110 Hb_001195_350 Hb_001195_350 Hb_001818_060--Hb_001195_350 Hb_000676_040 Hb_000676_040 Hb_001818_060--Hb_000676_040 Hb_000836_600--Hb_001133_010 Hb_004013_020 Hb_004013_020 Hb_000836_600--Hb_004013_020 Hb_000836_600--Hb_000200_170 Hb_143766_030 Hb_143766_030 Hb_000836_600--Hb_143766_030 Hb_002876_250 Hb_002876_250 Hb_000836_600--Hb_002876_250 Hb_000836_600--Hb_002849_070 Hb_006054_030 Hb_006054_030 Hb_001133_010--Hb_006054_030 Hb_001133_010--Hb_000200_170 Hb_001133_010--Hb_143766_030 Hb_002875_070 Hb_002875_070 Hb_001133_010--Hb_002875_070 Hb_000069_780 Hb_000069_780 Hb_001133_010--Hb_000069_780 Hb_000258_370 Hb_000258_370 Hb_138585_100--Hb_000258_370 Hb_138585_100--Hb_006054_030 Hb_002071_050 Hb_002071_050 Hb_138585_100--Hb_002071_050 Hb_000252_210 Hb_000252_210 Hb_138585_100--Hb_000252_210 Hb_006711_070 Hb_006711_070 Hb_138585_100--Hb_006711_070 Hb_000270_230 Hb_000270_230 Hb_138585_100--Hb_000270_230 Hb_103788_010--Hb_003637_020 Hb_003752_120 Hb_003752_120 Hb_103788_010--Hb_003752_120 Hb_002915_070 Hb_002915_070 Hb_103788_010--Hb_002915_070 Hb_185513_010 Hb_185513_010 Hb_103788_010--Hb_185513_010 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6857 9.70946 1.12142 9.95402 1.50058 0.86579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54836 0.837251 0.561734 2.21719 1.48311

CAGE analysis