Hb_029584_040

Information

Type -
Description -
Location Contig29584: 15058-19032
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06900g
description Ndr family protein
nr
ID KGN66217.1
description hypothetical protein Csa_1G586790 [Cucumis sativus]
swissprot
ID O23969
description Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1
trembl
ID A0A0A0LZC6
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G586790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30912: 15044-19117 , PASA_asmbl_30913: 15220-15900
cDNA
(Sanger)
(ID:Location)		 044_K16.ab1: 15044-18029 , 044_L07.ab1: 15044-18212

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_040 0.0 - - hypothetical protein Csa_1G586790 [Cucumis sativus]
2 Hb_077549_010 0.0845636833 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
3 Hb_002400_320 0.1008509724 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000663_020 0.1112705175 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000186_300 0.1171692879 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
6 Hb_002316_140 0.1203388742 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
7 Hb_000160_070 0.1223869699 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
8 Hb_000703_100 0.1242813573 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Jatropha curcas]
9 Hb_010098_020 0.1256962305 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_005064_010 0.1258848831 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
11 Hb_027905_020 0.1268876038 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
12 Hb_002284_210 0.1269714764 - - PREDICTED: protein canopy-1 [Jatropha curcas]
13 Hb_012262_040 0.1274228054 - - PREDICTED: uncharacterized protein LOC105633697 [Jatropha curcas]
14 Hb_000291_180 0.1285426244 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
15 Hb_077026_010 0.1287086882 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
16 Hb_000359_290 0.1292430919 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
17 Hb_001349_030 0.1302768294 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
18 Hb_003506_030 0.1310024113 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_143766_020 0.1310448362 - - putative phospholipase A2 [Gossypium arboreum]
20 Hb_002874_180 0.1311426664 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029584_040 Hb_029584_040 Hb_077549_010 Hb_077549_010 Hb_029584_040--Hb_077549_010 Hb_002400_320 Hb_002400_320 Hb_029584_040--Hb_002400_320 Hb_000663_020 Hb_000663_020 Hb_029584_040--Hb_000663_020 Hb_000186_300 Hb_000186_300 Hb_029584_040--Hb_000186_300 Hb_002316_140 Hb_002316_140 Hb_029584_040--Hb_002316_140 Hb_000160_070 Hb_000160_070 Hb_029584_040--Hb_000160_070 Hb_174865_040 Hb_174865_040 Hb_077549_010--Hb_174865_040 Hb_000291_180 Hb_000291_180 Hb_077549_010--Hb_000291_180 Hb_077549_010--Hb_002400_320 Hb_077549_010--Hb_002316_140 Hb_160271_010 Hb_160271_010 Hb_077549_010--Hb_160271_010 Hb_008406_180 Hb_008406_180 Hb_002400_320--Hb_008406_180 Hb_005977_100 Hb_005977_100 Hb_002400_320--Hb_005977_100 Hb_000212_120 Hb_000212_120 Hb_002400_320--Hb_000212_120 Hb_005015_060 Hb_005015_060 Hb_002400_320--Hb_005015_060 Hb_004531_100 Hb_004531_100 Hb_002400_320--Hb_004531_100 Hb_000703_100 Hb_000703_100 Hb_002400_320--Hb_000703_100 Hb_005731_110 Hb_005731_110 Hb_000663_020--Hb_005731_110 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_005162_110 Hb_005162_110 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_009476_130 Hb_009476_130 Hb_000186_300--Hb_009476_130 Hb_000003_680 Hb_000003_680 Hb_000186_300--Hb_000003_680 Hb_000186_300--Hb_003506_030 Hb_001623_490 Hb_001623_490 Hb_000186_300--Hb_001623_490 Hb_000186_300--Hb_000291_180 Hb_004531_150 Hb_004531_150 Hb_000186_300--Hb_004531_150 Hb_002572_020 Hb_002572_020 Hb_002316_140--Hb_002572_020 Hb_010098_020 Hb_010098_020 Hb_002316_140--Hb_010098_020 Hb_014497_100 Hb_014497_100 Hb_002316_140--Hb_014497_100 Hb_000537_100 Hb_000537_100 Hb_002316_140--Hb_000537_100 Hb_001178_010 Hb_001178_010 Hb_002316_140--Hb_001178_010 Hb_073973_090 Hb_073973_090 Hb_002316_140--Hb_073973_090 Hb_002740_080 Hb_002740_080 Hb_000160_070--Hb_002740_080 Hb_001677_200 Hb_001677_200 Hb_000160_070--Hb_001677_200 Hb_001227_120 Hb_001227_120 Hb_000160_070--Hb_001227_120 Hb_004064_040 Hb_004064_040 Hb_000160_070--Hb_004064_040 Hb_005064_010 Hb_005064_010 Hb_000160_070--Hb_005064_010 Hb_000903_010 Hb_000903_010 Hb_000160_070--Hb_000903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63208 6.36511 14.7951 14.9863 7.30843 6.63491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42559 6.37196 1.68158 2.62241 10.2292

CAGE analysis