Hb_000116_550

Information

Type -
Description -
Location Contig116: 476233-476649
Sequence    

Annotation

kegg
ID rcu:RCOM_0612990
description hypothetical protein
nr
ID XP_002528523.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRA4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0612990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_550 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000161_250 0.1177588111 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
3 Hb_000076_200 0.1391871727 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000497_120 0.1489461175 - - conserved hypothetical protein [Ricinus communis]
5 Hb_144783_010 0.1503941963 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_000648_120 0.156041613 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
7 Hb_000907_190 0.1565670023 - - PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]
8 Hb_000135_050 0.1568373225 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
9 Hb_002475_070 0.1625591816 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
10 Hb_011486_030 0.1625890678 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
11 Hb_002521_010 0.163701194 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
12 Hb_003968_020 0.1672247993 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
13 Hb_000200_180 0.1701851859 - - -
14 Hb_159015_010 0.1702606002 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_000934_170 0.1710915945 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_006620_040 0.1756233549 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
17 Hb_007532_050 0.1760406864 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
18 Hb_000301_030 0.1774886123 - - PREDICTED: pectate lyase-like [Jatropha curcas]
19 Hb_004037_010 0.1787263968 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
20 Hb_000438_190 0.1801933887 - - PREDICTED: peroxidase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000116_550 Hb_000116_550 Hb_000161_250 Hb_000161_250 Hb_000116_550--Hb_000161_250 Hb_000076_200 Hb_000076_200 Hb_000116_550--Hb_000076_200 Hb_000497_120 Hb_000497_120 Hb_000116_550--Hb_000497_120 Hb_144783_010 Hb_144783_010 Hb_000116_550--Hb_144783_010 Hb_000648_120 Hb_000648_120 Hb_000116_550--Hb_000648_120 Hb_000907_190 Hb_000907_190 Hb_000116_550--Hb_000907_190 Hb_000161_250--Hb_000076_200 Hb_004037_010 Hb_004037_010 Hb_000161_250--Hb_004037_010 Hb_000200_180 Hb_000200_180 Hb_000161_250--Hb_000200_180 Hb_002521_010 Hb_002521_010 Hb_000161_250--Hb_002521_010 Hb_000161_250--Hb_144783_010 Hb_003968_020 Hb_003968_020 Hb_000076_200--Hb_003968_020 Hb_007532_050 Hb_007532_050 Hb_000076_200--Hb_007532_050 Hb_000076_200--Hb_004037_010 Hb_005356_010 Hb_005356_010 Hb_000076_200--Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_000076_200--Hb_007527_020 Hb_005064_040 Hb_005064_040 Hb_000497_120--Hb_005064_040 Hb_031340_030 Hb_031340_030 Hb_000497_120--Hb_031340_030 Hb_027141_010 Hb_027141_010 Hb_000497_120--Hb_027141_010 Hb_159015_010 Hb_159015_010 Hb_000497_120--Hb_159015_010 Hb_000140_260 Hb_000140_260 Hb_000497_120--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_000497_120--Hb_000205_210 Hb_002475_070 Hb_002475_070 Hb_144783_010--Hb_002475_070 Hb_144783_010--Hb_000200_180 Hb_004316_130 Hb_004316_130 Hb_144783_010--Hb_004316_130 Hb_000297_180 Hb_000297_180 Hb_144783_010--Hb_000297_180 Hb_144783_010--Hb_002521_010 Hb_003893_100 Hb_003893_100 Hb_144783_010--Hb_003893_100 Hb_000301_030 Hb_000301_030 Hb_000648_120--Hb_000301_030 Hb_000281_200 Hb_000281_200 Hb_000648_120--Hb_000281_200 Hb_000245_140 Hb_000245_140 Hb_000648_120--Hb_000245_140 Hb_020332_040 Hb_020332_040 Hb_000648_120--Hb_020332_040 Hb_000135_050 Hb_000135_050 Hb_000648_120--Hb_000135_050 Hb_001544_040 Hb_001544_040 Hb_000648_120--Hb_001544_040 Hb_000907_190--Hb_003968_020 Hb_023080_010 Hb_023080_010 Hb_000907_190--Hb_023080_010 Hb_006620_040 Hb_006620_040 Hb_000907_190--Hb_006620_040 Hb_004190_010 Hb_004190_010 Hb_000907_190--Hb_004190_010 Hb_000907_190--Hb_000076_200 Hb_012660_010 Hb_012660_010 Hb_000907_190--Hb_012660_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.669413 0.0609222 2.68707 0 0.20483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.234475 17.2904 1.03108

CAGE analysis