Hb_000347_530

Information

Type transcription factor
Description TF Family: MYB
Location Contig347: 484729-485917
Sequence    

Annotation

kegg
ID tcc:TCM_029126
description Myb domain protein 23
nr
ID XP_012068885.1
description PREDICTED: transcription factor MYB114-like [Jatropha curcas]
swissprot
ID Q96276
description Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1
trembl
ID A0A067KX10
description MYB family protein OS=Jatropha curcas GN=JCGZ_24705 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb114-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36253: 484821-485622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_530 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
2 Hb_018591_010 0.109603885 - - kinase, putative [Ricinus communis]
3 Hb_004544_070 0.1124266619 - - unnamed protein product [Vitis vinifera]
4 Hb_000934_170 0.1138985522 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_002301_420 0.1174639098 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
6 Hb_002749_070 0.1178270094 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
7 Hb_010407_120 0.1215244396 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
8 Hb_002232_400 0.1216872123 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
9 Hb_002521_010 0.1259071211 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
10 Hb_000438_190 0.1279156701 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
11 Hb_164283_010 0.1288679731 - - hypothetical protein RCOM_0725500 [Ricinus communis]
12 Hb_028008_010 0.1294727752 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
13 Hb_000297_180 0.1313729554 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
14 Hb_006538_070 0.1330222085 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
15 Hb_011145_020 0.1332507262 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
16 Hb_162557_010 0.1338833213 - - PREDICTED: uncharacterized protein LOC105634192 [Jatropha curcas]
17 Hb_012368_080 0.1346299627 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
18 Hb_002232_370 0.1349984839 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
19 Hb_000933_200 0.1363969206 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
20 Hb_004324_200 0.1379683208 - - PREDICTED: transcription factor TRY-like [Populus euphratica]

Gene co-expression network

sample Hb_000347_530 Hb_000347_530 Hb_018591_010 Hb_018591_010 Hb_000347_530--Hb_018591_010 Hb_004544_070 Hb_004544_070 Hb_000347_530--Hb_004544_070 Hb_000934_170 Hb_000934_170 Hb_000347_530--Hb_000934_170 Hb_002301_420 Hb_002301_420 Hb_000347_530--Hb_002301_420 Hb_002749_070 Hb_002749_070 Hb_000347_530--Hb_002749_070 Hb_010407_120 Hb_010407_120 Hb_000347_530--Hb_010407_120 Hb_164283_010 Hb_164283_010 Hb_018591_010--Hb_164283_010 Hb_008418_010 Hb_008418_010 Hb_018591_010--Hb_008418_010 Hb_006637_040 Hb_006637_040 Hb_018591_010--Hb_006637_040 Hb_018591_010--Hb_004544_070 Hb_018591_010--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_018591_010--Hb_011145_020 Hb_004544_070--Hb_002749_070 Hb_004544_070--Hb_164283_010 Hb_000438_190 Hb_000438_190 Hb_004544_070--Hb_000438_190 Hb_004544_070--Hb_011145_020 Hb_004544_070--Hb_006637_040 Hb_000934_170--Hb_002749_070 Hb_000934_170--Hb_004544_070 Hb_001758_120 Hb_001758_120 Hb_000934_170--Hb_001758_120 Hb_000934_170--Hb_006637_040 Hb_000934_170--Hb_164283_010 Hb_002301_420--Hb_018591_010 Hb_002301_420--Hb_164283_010 Hb_012368_080 Hb_012368_080 Hb_002301_420--Hb_012368_080 Hb_000540_030 Hb_000540_030 Hb_002301_420--Hb_000540_030 Hb_002301_420--Hb_006637_040 Hb_018133_110 Hb_018133_110 Hb_002301_420--Hb_018133_110 Hb_002749_070--Hb_164283_010 Hb_002749_070--Hb_011145_020 Hb_000025_740 Hb_000025_740 Hb_002749_070--Hb_000025_740 Hb_002749_070--Hb_000438_190 Hb_001544_040 Hb_001544_040 Hb_010407_120--Hb_001544_040 Hb_007532_050 Hb_007532_050 Hb_010407_120--Hb_007532_050 Hb_000933_200 Hb_000933_200 Hb_010407_120--Hb_000933_200 Hb_007527_020 Hb_007527_020 Hb_010407_120--Hb_007527_020 Hb_003253_020 Hb_003253_020 Hb_010407_120--Hb_003253_020 Hb_010407_120--Hb_000438_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0256916 0.464985 0.687673 1.85933 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0463788 0 9.76702 0.0939923

CAGE analysis