Hb_002681_050

Information

Type -
Description -
Location Contig2681: 32794-37972
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35480g
description POPTRDRAFT_797873; kinase family protein
nr
ID XP_012071932.1
description PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067LPF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10244 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27922: 32951-37946
cDNA
(Sanger)
(ID:Location)		 046_G01r.ab1: 36089-51076

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_050 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
2 Hb_000606_090 0.0880961571 - - Far upstream element-binding protein, putative [Ricinus communis]
3 Hb_007477_080 0.0902126097 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001377_320 0.0920405618 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
5 Hb_073171_040 0.0948569703 - - malic enzyme, putative [Ricinus communis]
6 Hb_008511_130 0.0952059466 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
7 Hb_002529_060 0.0958216763 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
8 Hb_008643_210 0.0999141495 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
9 Hb_000020_190 0.1012637666 - - hypothetical protein RCOM_0452240 [Ricinus communis]
10 Hb_007451_050 0.1013855433 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
11 Hb_000230_560 0.1018256464 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
12 Hb_007075_040 0.1020352696 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
13 Hb_002671_140 0.1028063986 - - calcium-dependent protein kinase [Hevea brasiliensis]
14 Hb_000599_180 0.10388306 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000141_250 0.1042409333 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
16 Hb_002997_080 0.1043626494 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
17 Hb_000618_040 0.1045882786 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
18 Hb_005306_100 0.1046821319 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
19 Hb_000494_040 0.1059560068 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
20 Hb_001369_180 0.1059658481 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002681_050 Hb_002681_050 Hb_000606_090 Hb_000606_090 Hb_002681_050--Hb_000606_090 Hb_007477_080 Hb_007477_080 Hb_002681_050--Hb_007477_080 Hb_001377_320 Hb_001377_320 Hb_002681_050--Hb_001377_320 Hb_073171_040 Hb_073171_040 Hb_002681_050--Hb_073171_040 Hb_008511_130 Hb_008511_130 Hb_002681_050--Hb_008511_130 Hb_002529_060 Hb_002529_060 Hb_002681_050--Hb_002529_060 Hb_001135_060 Hb_001135_060 Hb_000606_090--Hb_001135_060 Hb_000212_240 Hb_000212_240 Hb_000606_090--Hb_000212_240 Hb_000494_040 Hb_000494_040 Hb_000606_090--Hb_000494_040 Hb_003665_060 Hb_003665_060 Hb_000606_090--Hb_003665_060 Hb_001444_010 Hb_001444_010 Hb_000606_090--Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_000606_090--Hb_000025_110 Hb_006816_390 Hb_006816_390 Hb_007477_080--Hb_006816_390 Hb_001100_050 Hb_001100_050 Hb_007477_080--Hb_001100_050 Hb_001862_190 Hb_001862_190 Hb_007477_080--Hb_001862_190 Hb_033153_050 Hb_033153_050 Hb_007477_080--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_007477_080--Hb_000134_090 Hb_000699_140 Hb_000699_140 Hb_007477_080--Hb_000699_140 Hb_003813_040 Hb_003813_040 Hb_001377_320--Hb_003813_040 Hb_002022_060 Hb_002022_060 Hb_001377_320--Hb_002022_060 Hb_007904_120 Hb_007904_120 Hb_001377_320--Hb_007904_120 Hb_000777_050 Hb_000777_050 Hb_001377_320--Hb_000777_050 Hb_000368_020 Hb_000368_020 Hb_001377_320--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_001377_320--Hb_000189_330 Hb_001141_020 Hb_001141_020 Hb_073171_040--Hb_001141_020 Hb_073171_040--Hb_008511_130 Hb_000010_090 Hb_000010_090 Hb_073171_040--Hb_000010_090 Hb_000618_030 Hb_000618_030 Hb_073171_040--Hb_000618_030 Hb_002997_080 Hb_002997_080 Hb_073171_040--Hb_002997_080 Hb_000679_130 Hb_000679_130 Hb_073171_040--Hb_000679_130 Hb_000141_250 Hb_000141_250 Hb_008511_130--Hb_000141_250 Hb_008511_130--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_008511_130--Hb_000230_560 Hb_000390_170 Hb_000390_170 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_002529_060--Hb_006816_390 Hb_000645_050 Hb_000645_050 Hb_002529_060--Hb_000645_050 Hb_000465_430 Hb_000465_430 Hb_002529_060--Hb_000465_430 Hb_002495_040 Hb_002495_040 Hb_002529_060--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_002529_060--Hb_003502_080 Hb_000322_100 Hb_000322_100 Hb_002529_060--Hb_000322_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.7153 16.1568 22.0099 21.2118 22.089 37.9728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8384 16.895 22.4175 6.65053 18.1475

CAGE analysis