Hb_000776_110

Information

Type -
Description -
Location Contig776: 131487-134628
Sequence    

Annotation

kegg
ID rcu:RCOM_1468960
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012080409.1
description PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
swissprot
ID Q9FME4
description Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis thaliana GN=PNM1 PE=1 SV=1
trembl
ID A0A067K568
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11747 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57802: 132358-132605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000776_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
2 Hb_001269_550 0.0671048115 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
3 Hb_000152_820 0.0684647034 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
4 Hb_001159_100 0.0709737892 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
5 Hb_001975_160 0.0724396511 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_002039_010 0.0787460598 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_000317_020 0.0809157119 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
8 Hb_002496_030 0.0813457717 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
9 Hb_000421_260 0.0824064171 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
10 Hb_175338_030 0.0864671678 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
11 Hb_015306_020 0.0873412045 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
12 Hb_004837_040 0.0873965208 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
13 Hb_007951_050 0.0877486205 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000977_070 0.0878356641 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
15 Hb_007757_110 0.0878844851 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
16 Hb_000022_250 0.091741732 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
17 Hb_002890_340 0.0925117899 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
18 Hb_000953_010 0.094455329 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
19 Hb_000453_170 0.0952258918 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000619_080 0.0957267194 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]

Gene co-expression network

sample Hb_000776_110 Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000776_110--Hb_001269_550 Hb_000152_820 Hb_000152_820 Hb_000776_110--Hb_000152_820 Hb_001159_100 Hb_001159_100 Hb_000776_110--Hb_001159_100 Hb_001975_160 Hb_001975_160 Hb_000776_110--Hb_001975_160 Hb_002039_010 Hb_002039_010 Hb_000776_110--Hb_002039_010 Hb_000317_020 Hb_000317_020 Hb_000776_110--Hb_000317_020 Hb_002496_030 Hb_002496_030 Hb_001269_550--Hb_002496_030 Hb_019654_190 Hb_019654_190 Hb_001269_550--Hb_019654_190 Hb_001269_550--Hb_000152_820 Hb_006400_060 Hb_006400_060 Hb_001269_550--Hb_006400_060 Hb_002016_110 Hb_002016_110 Hb_001269_550--Hb_002016_110 Hb_010175_020 Hb_010175_020 Hb_000152_820--Hb_010175_020 Hb_000152_820--Hb_000317_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_029584_130 Hb_029584_130 Hb_001159_100--Hb_029584_130 Hb_007951_050 Hb_007951_050 Hb_001159_100--Hb_007951_050 Hb_001159_100--Hb_002496_030 Hb_000427_050 Hb_000427_050 Hb_001159_100--Hb_000427_050 Hb_000022_250 Hb_000022_250 Hb_001159_100--Hb_000022_250 Hb_001507_020 Hb_001507_020 Hb_001975_160--Hb_001507_020 Hb_001975_160--Hb_000317_020 Hb_013405_030 Hb_013405_030 Hb_001975_160--Hb_013405_030 Hb_001975_160--Hb_007757_110 Hb_001975_160--Hb_000152_820 Hb_002890_340 Hb_002890_340 Hb_002039_010--Hb_002890_340 Hb_004204_020 Hb_004204_020 Hb_002039_010--Hb_004204_020 Hb_004452_100 Hb_004452_100 Hb_002039_010--Hb_004452_100 Hb_002039_010--Hb_000152_820 Hb_000184_130 Hb_000184_130 Hb_002039_010--Hb_000184_130 Hb_015306_020 Hb_015306_020 Hb_002039_010--Hb_015306_020 Hb_000317_020--Hb_001736_040 Hb_002876_110 Hb_002876_110 Hb_000317_020--Hb_002876_110 Hb_000661_050 Hb_000661_050 Hb_000317_020--Hb_000661_050 Hb_004600_040 Hb_004600_040 Hb_000317_020--Hb_004600_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.41952 4.60555 1.68744 1.15004 6.39234 8.558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81984 5.5939 9.72334 4.69144 2.96216

CAGE analysis