Hb_000390_130

Information

Type -
Description -
Location Contig390: 155026-161306
Sequence    

Annotation

kegg
ID tcc:TCM_025550
description Chaperone DnaJ-domain superfamily protein isoform 1
nr
ID XP_012070245.1
description PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
swissprot
ID A3DF24
description Chaperone protein DnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) GN=dnaJ PE=3 SV=1
trembl
ID A0A067KTI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02561 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39090: 155264-160848 , PASA_asmbl_39091: 157610-158050 , PASA_asmbl_39092: 158506-160127 , PASA_asmbl_39093: 160873-161120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_130 0.0 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
2 Hb_000948_180 0.0764794342 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
3 Hb_002639_150 0.0957383318 - - -
4 Hb_001357_090 0.0966871522 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
5 Hb_027043_020 0.0977474072 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001329_130 0.1003853121 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000926_310 0.1021791531 - - uncharacterized protein LOC100500241 [Glycine max]
8 Hb_000260_100 0.1026536178 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000926_180 0.1037352861 - - proline synthetase associated protein, putative [Ricinus communis]
10 Hb_003994_200 0.1056576842 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
11 Hb_003142_070 0.105803071 - - hypothetical protein F383_14657 [Gossypium arboreum]
12 Hb_001983_030 0.1062508007 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
13 Hb_032202_230 0.1083696497 - - peroxisomal biogenesis factor, putative [Ricinus communis]
14 Hb_001586_040 0.1088819006 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
15 Hb_003018_060 0.1094098523 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
16 Hb_000368_020 0.1100741749 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
17 Hb_001352_090 0.1108046135 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
18 Hb_000649_070 0.1111318496 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
19 Hb_000390_310 0.1120562608 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
20 Hb_003687_230 0.1133687451 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]

Gene co-expression network

sample Hb_000390_130 Hb_000390_130 Hb_000948_180 Hb_000948_180 Hb_000390_130--Hb_000948_180 Hb_002639_150 Hb_002639_150 Hb_000390_130--Hb_002639_150 Hb_001357_090 Hb_001357_090 Hb_000390_130--Hb_001357_090 Hb_027043_020 Hb_027043_020 Hb_000390_130--Hb_027043_020 Hb_001329_130 Hb_001329_130 Hb_000390_130--Hb_001329_130 Hb_000926_310 Hb_000926_310 Hb_000390_130--Hb_000926_310 Hb_000390_310 Hb_000390_310 Hb_000948_180--Hb_000390_310 Hb_032202_230 Hb_032202_230 Hb_000948_180--Hb_032202_230 Hb_005695_060 Hb_005695_060 Hb_000948_180--Hb_005695_060 Hb_003142_070 Hb_003142_070 Hb_000948_180--Hb_003142_070 Hb_001652_080 Hb_001652_080 Hb_000948_180--Hb_001652_080 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_003994_200 Hb_003994_200 Hb_001357_090--Hb_003994_200 Hb_003020_010 Hb_003020_010 Hb_001357_090--Hb_003020_010 Hb_001357_090--Hb_000926_310 Hb_000046_300 Hb_000046_300 Hb_001357_090--Hb_000046_300 Hb_002024_040 Hb_002024_040 Hb_001357_090--Hb_002024_040 Hb_001357_090--Hb_001329_130 Hb_002918_030 Hb_002918_030 Hb_027043_020--Hb_002918_030 Hb_027043_020--Hb_002639_150 Hb_002495_040 Hb_002495_040 Hb_027043_020--Hb_002495_040 Hb_003683_050 Hb_003683_050 Hb_027043_020--Hb_003683_050 Hb_000260_100 Hb_000260_100 Hb_027043_020--Hb_000260_100 Hb_001936_080 Hb_001936_080 Hb_027043_020--Hb_001936_080 Hb_001329_130--Hb_000260_100 Hb_001329_130--Hb_020367_050 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_001329_130--Hb_005288_150 Hb_006960_050 Hb_006960_050 Hb_001329_130--Hb_006960_050 Hb_000926_310--Hb_000661_140 Hb_000926_310--Hb_020367_050 Hb_000926_310--Hb_003687_230 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9456 10.2718 23.538 10.3955 27.9915 22.0565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5735 20.3396 9.64105 3.31486 12.8493

CAGE analysis