Hb_003020_010

Information

Type transcription factor
Description TF Family: G2-like
Location Contig3020: 6163-9571
Sequence    

Annotation

kegg
ID vvi:100253567
description transcription factor PCL1
nr
ID XP_012066973.1
description PREDICTED: transcription factor LUX [Jatropha curcas]
swissprot
ID Q9SNB4
description Transcription factor LUX OS=Arabidopsis thaliana GN=LUX PE=1 SV=1
trembl
ID A0A067L1F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02952 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor lux

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31817: 6284-6781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_010 0.0 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
2 Hb_016461_010 0.0705937445 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
3 Hb_000390_170 0.0739091664 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
4 Hb_020367_050 0.0822925444 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
5 Hb_005288_150 0.0827861116 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
6 Hb_000390_180 0.0839760868 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
7 Hb_001329_130 0.0856185442 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012627_050 0.0869918734 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_001621_170 0.0874012357 - - protein binding protein, putative [Ricinus communis]
10 Hb_001357_090 0.0874025059 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
11 Hb_009646_030 0.0921712157 - - conserved hypothetical protein [Ricinus communis]
12 Hb_031527_100 0.092958082 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000676_050 0.0929855558 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
14 Hb_000498_010 0.0964473742 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000926_310 0.0991573701 - - uncharacterized protein LOC100500241 [Glycine max]
16 Hb_002639_150 0.0991706768 - - -
17 Hb_000141_250 0.1000281913 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
18 Hb_000395_020 0.1003611189 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
19 Hb_002749_090 0.1006110564 - - -
20 Hb_000207_130 0.1007915859 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_010 Hb_003020_010 Hb_016461_010 Hb_016461_010 Hb_003020_010--Hb_016461_010 Hb_000390_170 Hb_000390_170 Hb_003020_010--Hb_000390_170 Hb_020367_050 Hb_020367_050 Hb_003020_010--Hb_020367_050 Hb_005288_150 Hb_005288_150 Hb_003020_010--Hb_005288_150 Hb_000390_180 Hb_000390_180 Hb_003020_010--Hb_000390_180 Hb_001329_130 Hb_001329_130 Hb_003020_010--Hb_001329_130 Hb_016461_010--Hb_000390_180 Hb_000617_240 Hb_000617_240 Hb_016461_010--Hb_000617_240 Hb_000498_010 Hb_000498_010 Hb_016461_010--Hb_000498_010 Hb_011609_080 Hb_011609_080 Hb_016461_010--Hb_011609_080 Hb_001621_170 Hb_001621_170 Hb_016461_010--Hb_001621_170 Hb_008511_130 Hb_008511_130 Hb_000390_170--Hb_008511_130 Hb_000141_250 Hb_000141_250 Hb_000390_170--Hb_000141_250 Hb_000390_170--Hb_005288_150 Hb_006817_010 Hb_006817_010 Hb_000390_170--Hb_006817_010 Hb_002950_100 Hb_002950_100 Hb_000390_170--Hb_002950_100 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_020367_050--Hb_001329_130 Hb_020367_050--Hb_005288_150 Hb_000926_310 Hb_000926_310 Hb_020367_050--Hb_000926_310 Hb_006960_050 Hb_006960_050 Hb_020367_050--Hb_006960_050 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_005288_150--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_005288_150--Hb_001329_130 Hb_000390_180--Hb_000498_010 Hb_000853_230 Hb_000853_230 Hb_000390_180--Hb_000853_230 Hb_001390_110 Hb_001390_110 Hb_000390_180--Hb_001390_110 Hb_006620_020 Hb_006620_020 Hb_000390_180--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_000390_180--Hb_001936_060 Hb_001329_130--Hb_000260_100 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_001329_130--Hb_006960_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22504 1.78237 4.1633 1.35592 4.9385 3.27839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8632 2.56605 3.13271 2.22017 1.39374

CAGE analysis