Hb_010584_020

Information

Type -
Description -
Location Contig10584: 28523-37048
Sequence    

Annotation

kegg
ID rcu:RCOM_1691810
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_012086739.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067K0I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20465 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01915: 28519-37398 , PASA_asmbl_01917: 28618-32819
cDNA
(Sanger)
(ID:Location)		 003_G22.ab1: 33528-37127 , 038_F03.ab1: 36359-37127 , 048_E17.ab1: 33541-37105

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010584_020 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_000486_020 0.0862047158 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
3 Hb_003937_010 0.1013393627 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
4 Hb_006618_110 0.1042369745 - - -
5 Hb_010534_040 0.1053105956 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
6 Hb_000155_020 0.1062982452 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001051_010 0.1065560405 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
8 Hb_000962_090 0.1085837181 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
9 Hb_001321_010 0.1086329545 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
10 Hb_002007_220 0.1096073225 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
11 Hb_004994_030 0.1097074941 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
12 Hb_000313_250 0.1101746204 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
13 Hb_003777_090 0.1105484145 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
14 Hb_003373_050 0.1112315715 - - receptor protein kinase zmpk1, putative [Ricinus communis]
15 Hb_011013_040 0.1138750349 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
16 Hb_063405_010 0.1141843023 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
17 Hb_001942_010 0.1142545798 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
18 Hb_010136_010 0.1147158283 - - Putative receptor-like protein kinase [Glycine soja]
19 Hb_003494_090 0.1152855974 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
20 Hb_021443_060 0.115293928 - - PTH-1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_010584_020 Hb_010584_020 Hb_000486_020 Hb_000486_020 Hb_010584_020--Hb_000486_020 Hb_003937_010 Hb_003937_010 Hb_010584_020--Hb_003937_010 Hb_006618_110 Hb_006618_110 Hb_010584_020--Hb_006618_110 Hb_010534_040 Hb_010534_040 Hb_010584_020--Hb_010534_040 Hb_000155_020 Hb_000155_020 Hb_010584_020--Hb_000155_020 Hb_001051_010 Hb_001051_010 Hb_010584_020--Hb_001051_010 Hb_000486_020--Hb_006618_110 Hb_000486_020--Hb_010534_040 Hb_001606_010 Hb_001606_010 Hb_000486_020--Hb_001606_010 Hb_010136_010 Hb_010136_010 Hb_000486_020--Hb_010136_010 Hb_001926_070 Hb_001926_070 Hb_000486_020--Hb_001926_070 Hb_003937_010--Hb_006618_110 Hb_004994_030 Hb_004994_030 Hb_003937_010--Hb_004994_030 Hb_063405_010 Hb_063405_010 Hb_003937_010--Hb_063405_010 Hb_003937_010--Hb_000155_020 Hb_001014_240 Hb_001014_240 Hb_003937_010--Hb_001014_240 Hb_003777_090 Hb_003777_090 Hb_003937_010--Hb_003777_090 Hb_007545_070 Hb_007545_070 Hb_006618_110--Hb_007545_070 Hb_005892_050 Hb_005892_050 Hb_006618_110--Hb_005892_050 Hb_011013_040 Hb_011013_040 Hb_006618_110--Hb_011013_040 Hb_006618_110--Hb_010136_010 Hb_000302_360 Hb_000302_360 Hb_010534_040--Hb_000302_360 Hb_001352_030 Hb_001352_030 Hb_010534_040--Hb_001352_030 Hb_010534_040--Hb_001606_010 Hb_000645_260 Hb_000645_260 Hb_010534_040--Hb_000645_260 Hb_002890_160 Hb_002890_160 Hb_010534_040--Hb_002890_160 Hb_000155_020--Hb_011013_040 Hb_001159_050 Hb_001159_050 Hb_000155_020--Hb_001159_050 Hb_012395_090 Hb_012395_090 Hb_000155_020--Hb_012395_090 Hb_002007_220 Hb_002007_220 Hb_000155_020--Hb_002007_220 Hb_000155_020--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_000155_020--Hb_004017_030 Hb_000608_290 Hb_000608_290 Hb_001051_010--Hb_000608_290 Hb_018591_020 Hb_018591_020 Hb_001051_010--Hb_018591_020 Hb_000627_050 Hb_000627_050 Hb_001051_010--Hb_000627_050 Hb_000023_130 Hb_000023_130 Hb_001051_010--Hb_000023_130 Hb_002073_150 Hb_002073_150 Hb_001051_010--Hb_002073_150 Hb_000140_460 Hb_000140_460 Hb_001051_010--Hb_000140_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33453 16.0435 87.2739 33.847 1.20362 1.31135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0399444 0.0755183 5.42487 80.7729

CAGE analysis