Hb_001221_060

Information

Type -
Description -
Location Contig1221: 26312-32459
Sequence    

Annotation

kegg
ID pmum:103338046
description cycloeucalenol cycloisomerase
nr
ID XP_012079863.1
description PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
swissprot
ID Q9M643
description Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1
trembl
ID A0A067K7D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11314 PE=4 SV=1
Gene Ontology
ID GO:0005739
description cycloeucalenol cycloisomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06701: 23163-25942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_060 0.0 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
2 Hb_128196_010 0.0884532644 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002301_400 0.1005515968 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_000465_020 0.1043998855 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
5 Hb_070498_010 0.1048838827 - - receptor kinase, putative [Ricinus communis]
6 Hb_005568_020 0.1074946586 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
7 Hb_008511_040 0.1167842458 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_002078_390 0.1182548426 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
9 Hb_000120_340 0.1183337991 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_000836_090 0.1207086144 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_169893_010 0.1223001701 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
12 Hb_012404_020 0.1228791749 - - conserved hypothetical protein [Ricinus communis]
13 Hb_047659_010 0.1249606584 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006133_020 0.1265026607 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
15 Hb_005890_020 0.1279016801 - - putative plant disease resistance family protein [Populus trichocarpa]
16 Hb_028008_040 0.1286918631 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001104_150 0.1306787671 - - PREDICTED: protein ROS1 [Jatropha curcas]
18 Hb_000996_070 0.1314944279 - - unnamed protein product [Vitis vinifera]
19 Hb_001141_350 0.1318227306 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
20 Hb_005730_110 0.1324325559 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_060 Hb_001221_060 Hb_128196_010 Hb_128196_010 Hb_001221_060--Hb_128196_010 Hb_002301_400 Hb_002301_400 Hb_001221_060--Hb_002301_400 Hb_000465_020 Hb_000465_020 Hb_001221_060--Hb_000465_020 Hb_070498_010 Hb_070498_010 Hb_001221_060--Hb_070498_010 Hb_005568_020 Hb_005568_020 Hb_001221_060--Hb_005568_020 Hb_008511_040 Hb_008511_040 Hb_001221_060--Hb_008511_040 Hb_128196_010--Hb_070498_010 Hb_128196_010--Hb_002301_400 Hb_001157_050 Hb_001157_050 Hb_128196_010--Hb_001157_050 Hb_012404_020 Hb_012404_020 Hb_128196_010--Hb_012404_020 Hb_128196_010--Hb_005568_020 Hb_002301_400--Hb_070498_010 Hb_002301_400--Hb_012404_020 Hb_001159_090 Hb_001159_090 Hb_002301_400--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002301_400--Hb_006196_030 Hb_001195_550 Hb_001195_550 Hb_002301_400--Hb_001195_550 Hb_002078_390 Hb_002078_390 Hb_000465_020--Hb_002078_390 Hb_000836_090 Hb_000836_090 Hb_000465_020--Hb_000836_090 Hb_033006_020 Hb_033006_020 Hb_000465_020--Hb_033006_020 Hb_000465_020--Hb_005568_020 Hb_000465_020--Hb_128196_010 Hb_000996_030 Hb_000996_030 Hb_070498_010--Hb_000996_030 Hb_070498_010--Hb_012404_020 Hb_011918_070 Hb_011918_070 Hb_070498_010--Hb_011918_070 Hb_000003_750 Hb_000003_750 Hb_070498_010--Hb_000003_750 Hb_000735_060 Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_005568_020--Hb_002078_390 Hb_003606_050 Hb_003606_050 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_006133_020 Hb_006133_020 Hb_008511_040--Hb_006133_020 Hb_008511_040--Hb_000008_200 Hb_000069_300 Hb_000069_300 Hb_008511_040--Hb_000069_300 Hb_000227_400 Hb_000227_400 Hb_008511_040--Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169015 1.36716 7.44285 5.69407 0.311904 0.149056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.220951 0.0289689 0 0.753221 3.37189

CAGE analysis