Hb_006573_040

Information

Type -
Description -
Location Contig6573: 24170-28575
Sequence    

Annotation

kegg
ID rcu:RCOM_1582150
description DNA binding protein, putative
nr
ID XP_002513646.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8H0W3
description Protein REVEILLE 6 OS=Arabidopsis thaliana GN=RVE6 PE=2 SV=1
trembl
ID B9RIS7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1582150 PE=4 SV=1
Gene Ontology
ID GO:0005488
description homeodomain-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52804: 24390-28547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_040 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001366_090 0.0542946698 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
3 Hb_004994_240 0.0758149037 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
4 Hb_002232_480 0.0811035018 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
5 Hb_004096_180 0.0852752649 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
6 Hb_001300_010 0.0854641687 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
7 Hb_089839_010 0.0884271851 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
8 Hb_012239_020 0.0919754618 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
9 Hb_005137_040 0.0921453265 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
10 Hb_000088_170 0.0937163837 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
11 Hb_001723_150 0.0937769034 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
12 Hb_000089_210 0.0939696448 - - unknown [Medicago truncatula]
13 Hb_043792_010 0.0948518497 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
14 Hb_010775_030 0.0951600786 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
15 Hb_001761_120 0.0956456139 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
16 Hb_005245_100 0.096159909 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
17 Hb_004109_320 0.0961971937 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
18 Hb_002492_010 0.0962577264 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
19 Hb_062226_130 0.096617819 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
20 Hb_001357_310 0.0969003273 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_006573_040 Hb_006573_040 Hb_001366_090 Hb_001366_090 Hb_006573_040--Hb_001366_090 Hb_004994_240 Hb_004994_240 Hb_006573_040--Hb_004994_240 Hb_002232_480 Hb_002232_480 Hb_006573_040--Hb_002232_480 Hb_004096_180 Hb_004096_180 Hb_006573_040--Hb_004096_180 Hb_001300_010 Hb_001300_010 Hb_006573_040--Hb_001300_010 Hb_089839_010 Hb_089839_010 Hb_006573_040--Hb_089839_010 Hb_001366_090--Hb_002232_480 Hb_001366_090--Hb_004994_240 Hb_004586_060 Hb_004586_060 Hb_001366_090--Hb_004586_060 Hb_000046_570 Hb_000046_570 Hb_001366_090--Hb_000046_570 Hb_000236_490 Hb_000236_490 Hb_001366_090--Hb_000236_490 Hb_004994_240--Hb_001300_010 Hb_004994_240--Hb_002232_480 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_011360_050 Hb_011360_050 Hb_002232_480--Hb_011360_050 Hb_000802_090 Hb_000802_090 Hb_002232_480--Hb_000802_090 Hb_002232_480--Hb_001300_010 Hb_007017_040 Hb_007017_040 Hb_002232_480--Hb_007017_040 Hb_002872_030 Hb_002872_030 Hb_004096_180--Hb_002872_030 Hb_000087_060 Hb_000087_060 Hb_004096_180--Hb_000087_060 Hb_000096_120 Hb_000096_120 Hb_004096_180--Hb_000096_120 Hb_002028_210 Hb_002028_210 Hb_004096_180--Hb_002028_210 Hb_000359_040 Hb_000359_040 Hb_004096_180--Hb_000359_040 Hb_027428_010 Hb_027428_010 Hb_004096_180--Hb_027428_010 Hb_001300_010--Hb_003398_080 Hb_001300_010--Hb_002492_010 Hb_000120_910 Hb_000120_910 Hb_001300_010--Hb_000120_910 Hb_001300_010--Hb_000856_040 Hb_000476_060 Hb_000476_060 Hb_089839_010--Hb_000476_060 Hb_003498_100 Hb_003498_100 Hb_089839_010--Hb_003498_100 Hb_000703_190 Hb_000703_190 Hb_089839_010--Hb_000703_190 Hb_018790_020 Hb_018790_020 Hb_089839_010--Hb_018790_020 Hb_000089_210 Hb_000089_210 Hb_089839_010--Hb_000089_210 Hb_003098_070 Hb_003098_070 Hb_089839_010--Hb_003098_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.01062 12.7429 15.4976 15.043 6.37139 6.38559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.513 8.32071 10.3043 8.95537 5.66386

CAGE analysis