Hb_187247_020

Information

Type -
Description -
Location Contig187247: 20692-29654
Sequence    

Annotation

kegg
ID csv:101227219
description uncharacterized LOC101227219
nr
ID XP_004149735.1
description PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]
swissprot
ID P54168
description Uncharacterized protein YpgQ OS=Bacillus subtilis (strain 168) GN=ypgQ PE=4 SV=1
trembl
ID A0A0A0L9R2
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G681130 PE=4 SV=1
Gene Ontology
ID GO:0016787
description metal-dependent phosphohydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18484: 20621-29634 , PASA_asmbl_18485: 23993-24625 , PASA_asmbl_18486: 22710-29589 , PASA_asmbl_18488: 20629-22682
cDNA
(Sanger)
(ID:Location)		 001_B18.ab1: 20847-29564 , 007_A23.ab1: 20910-29634 , 022_I08.ab1: 21300-29563

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187247_020 0.0 - - PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]
2 Hb_001882_010 0.0956820724 - - -
3 Hb_006573_150 0.0991502978 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
4 Hb_001832_200 0.0995470756 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_001623_500 0.1020069119 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
6 Hb_001009_140 0.1021708551 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
7 Hb_000116_250 0.1040713309 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
8 Hb_000029_400 0.106294643 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
9 Hb_007741_120 0.1092992187 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
10 Hb_007741_110 0.11231829 - - -
11 Hb_000007_090 0.1141305743 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
12 Hb_000200_300 0.1143010119 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
13 Hb_003355_010 0.1154858132 - - Heat shock 70 kDa protein, putative [Ricinus communis]
14 Hb_000035_260 0.1161787581 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
15 Hb_049575_010 0.1163826638 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
16 Hb_003605_020 0.1166735744 - - exocyst complex component sec6, putative [Ricinus communis]
17 Hb_000579_080 0.1167713743 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
18 Hb_134849_010 0.1172187401 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_012733_040 0.1178246946 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
20 Hb_000330_090 0.1180246961 - - ornithine carbamoyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_187247_020 Hb_187247_020 Hb_001882_010 Hb_001882_010 Hb_187247_020--Hb_001882_010 Hb_006573_150 Hb_006573_150 Hb_187247_020--Hb_006573_150 Hb_001832_200 Hb_001832_200 Hb_187247_020--Hb_001832_200 Hb_001623_500 Hb_001623_500 Hb_187247_020--Hb_001623_500 Hb_001009_140 Hb_001009_140 Hb_187247_020--Hb_001009_140 Hb_000116_250 Hb_000116_250 Hb_187247_020--Hb_000116_250 Hb_000163_260 Hb_000163_260 Hb_001882_010--Hb_000163_260 Hb_000291_180 Hb_000291_180 Hb_001882_010--Hb_000291_180 Hb_000029_400 Hb_000029_400 Hb_001882_010--Hb_000029_400 Hb_000007_090 Hb_000007_090 Hb_001882_010--Hb_000007_090 Hb_160271_010 Hb_160271_010 Hb_001882_010--Hb_160271_010 Hb_073973_090 Hb_073973_090 Hb_001882_010--Hb_073973_090 Hb_007741_120 Hb_007741_120 Hb_006573_150--Hb_007741_120 Hb_012733_040 Hb_012733_040 Hb_006573_150--Hb_012733_040 Hb_003159_050 Hb_003159_050 Hb_006573_150--Hb_003159_050 Hb_007741_110 Hb_007741_110 Hb_006573_150--Hb_007741_110 Hb_000364_050 Hb_000364_050 Hb_006573_150--Hb_000364_050 Hb_012150_030 Hb_012150_030 Hb_006573_150--Hb_012150_030 Hb_001105_040 Hb_001105_040 Hb_001832_200--Hb_001105_040 Hb_001832_200--Hb_001882_010 Hb_025194_050 Hb_025194_050 Hb_001832_200--Hb_025194_050 Hb_010863_050 Hb_010863_050 Hb_001832_200--Hb_010863_050 Hb_000108_020 Hb_000108_020 Hb_001832_200--Hb_000108_020 Hb_068079_010 Hb_068079_010 Hb_001832_200--Hb_068079_010 Hb_004339_040 Hb_004339_040 Hb_001623_500--Hb_004339_040 Hb_001623_500--Hb_001832_200 Hb_007199_020 Hb_007199_020 Hb_001623_500--Hb_007199_020 Hb_017193_010 Hb_017193_010 Hb_001623_500--Hb_017193_010 Hb_000579_080 Hb_000579_080 Hb_001623_500--Hb_000579_080 Hb_005665_090 Hb_005665_090 Hb_001009_140--Hb_005665_090 Hb_101334_020 Hb_101334_020 Hb_001009_140--Hb_101334_020 Hb_000589_170 Hb_000589_170 Hb_001009_140--Hb_000589_170 Hb_001009_140--Hb_000029_400 Hb_006588_190 Hb_006588_190 Hb_001009_140--Hb_006588_190 Hb_001009_140--Hb_000116_250 Hb_138585_030 Hb_138585_030 Hb_000116_250--Hb_138585_030 Hb_001390_100 Hb_001390_100 Hb_000116_250--Hb_001390_100 Hb_000585_110 Hb_000585_110 Hb_000116_250--Hb_000585_110 Hb_003355_010 Hb_003355_010 Hb_000116_250--Hb_003355_010 Hb_003440_020 Hb_003440_020 Hb_000116_250--Hb_003440_020 Hb_000116_250--Hb_000007_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5311 7.76252 39.5924 26.417 8.18186 9.35217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7481 19.5872 6.70501 25.0517 36.4233

CAGE analysis