Hb_010589_090

Information

Type -
Description -
Location Contig10589: 63886-64625
Sequence    

Annotation

kegg
ID cit:102619143
description snakin-1-like
nr
ID KHN42338.1
description Snakin-1 [Glycine soja]
swissprot
ID Q948Z4
description Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1
trembl
ID A0A0B2SC46
description Snakin-1 OS=Glycine soja GN=glysoja_020050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01928: 63754-64856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010589_090 0.0 - - Snakin-1 [Glycine soja]
2 Hb_003784_030 0.0777179886 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001021_190 0.0778511163 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
4 Hb_168451_010 0.0778937092 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
5 Hb_053224_010 0.0779179808 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
6 Hb_011515_020 0.0780701366 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
7 Hb_032907_020 0.0784928086 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_000295_140 0.0786153353 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
9 Hb_077165_010 0.0790263049 - - conserved hypothetical protein [Ricinus communis]
10 Hb_086720_010 0.0790434007 - - CTV.19 [Citrus trifoliata]
11 Hb_000005_150 0.0791892374 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
12 Hb_007407_020 0.0792450651 - - ATP binding protein, putative [Ricinus communis]
13 Hb_002383_010 0.0793931308 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_012758_020 0.0803932247 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_005858_010 0.0809085308 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
16 Hb_138485_010 0.0811412577 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
17 Hb_000245_010 0.0829735672 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
18 Hb_008887_060 0.0843399321 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
19 Hb_001414_070 0.0850043649 - - Zinc finger protein GIS2 [Medicago truncatula]
20 Hb_007138_020 0.0850762749 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]

Gene co-expression network

sample Hb_010589_090 Hb_010589_090 Hb_003784_030 Hb_003784_030 Hb_010589_090--Hb_003784_030 Hb_001021_190 Hb_001021_190 Hb_010589_090--Hb_001021_190 Hb_168451_010 Hb_168451_010 Hb_010589_090--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_010589_090--Hb_053224_010 Hb_011515_020 Hb_011515_020 Hb_010589_090--Hb_011515_020 Hb_032907_020 Hb_032907_020 Hb_010589_090--Hb_032907_020 Hb_003784_030--Hb_001021_190 Hb_003784_030--Hb_011515_020 Hb_003784_030--Hb_168451_010 Hb_003784_030--Hb_053224_010 Hb_077165_010 Hb_077165_010 Hb_003784_030--Hb_077165_010 Hb_000005_150 Hb_000005_150 Hb_003784_030--Hb_000005_150 Hb_001021_190--Hb_011515_020 Hb_001021_190--Hb_077165_010 Hb_001021_190--Hb_000005_150 Hb_001021_190--Hb_168451_010 Hb_001021_190--Hb_053224_010 Hb_168451_010--Hb_053224_010 Hb_168451_010--Hb_032907_020 Hb_000295_140 Hb_000295_140 Hb_168451_010--Hb_000295_140 Hb_086720_010 Hb_086720_010 Hb_168451_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_168451_010--Hb_007407_020 Hb_053224_010--Hb_032907_020 Hb_053224_010--Hb_000295_140 Hb_053224_010--Hb_086720_010 Hb_053224_010--Hb_007407_020 Hb_011515_020--Hb_077165_010 Hb_011515_020--Hb_000005_150 Hb_002383_010 Hb_002383_010 Hb_011515_020--Hb_002383_010 Hb_012758_020 Hb_012758_020 Hb_011515_020--Hb_012758_020 Hb_032907_020--Hb_000295_140 Hb_032907_020--Hb_086720_010 Hb_032907_020--Hb_007407_020 Hb_138485_010 Hb_138485_010 Hb_032907_020--Hb_138485_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 58.2376 91.2462 0.133754 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.68453 0

CAGE analysis